KEGG   Trachymyrmex cornetzi: 108762604
Entry
108762604         CDS       T11212                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tcz  Trachymyrmex cornetzi
Pathway
tcz03030  DNA replication
tcz03410  Base excision repair
tcz03420  Nucleotide excision repair
tcz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tcz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    108762604
   03410 Base excision repair
    108762604
   03420 Nucleotide excision repair
    108762604
   03430 Mismatch repair
    108762604
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tcz03032]
    108762604
   03400 DNA repair and recombination proteins [BR:tcz03400]
    108762604
Enzymes [BR:tcz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     108762604
    6.5.1.6  DNA ligase (ATP or NAD+)
     108762604
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     108762604
DNA replication proteins [BR:tcz03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    108762604
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     108762604
DNA repair and recombination proteins [BR:tcz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     108762604
   NER (nucleotide excision repair)
    Other NER factors
     108762604
   MMR (mismatch excision repair)
    Other MMR factors
     108762604
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 108762604
NCBI-ProteinID: XP_018365180
LinkDB
Position
Unknown
AA seq 982 aa
MLKILTTCSRLSSLALPIRRLELAVAARSRFVVFNWIHTINSHNLSDKQNQNATENGKRK
RDSSNSSSPPSKNVKRTKSKTVSKTPSPSVKPRKLGATPKIKPSKLSPGASKKAEKRQLK
DTPGKKKKKEEAKNINDVEEKVKNNHTENDITEEKNKKEESTFSMKESKSNEAEKVKKSV
KKKWSKIVQLVDSSDDETHLPLPGSPKKSETDNEEKKTESVDKSSNINKNVSDNASNNDA
NESASDNEEKNPSSKKESTPEKSQTPSKSESSKKESTPEKSQIPSKDENPKKEPTPEKKT
KKVPNFFMSKQKGDAKGDKVSNGKSANQSYNPSASVYHPIDDACWKRGDKTPYSAFARTL
EIIEETSARLKIIEILSNYFRSVMVLSPEDLLPSVYLCLNQLAPAYEGVEFGIADTNLMK
AIAQCTGRTLAQIRADVQEVGDLGIIAENSKSNQRTMFQPAPLTVPNLYSRLMEIAQMTG
HASLSKKLDKIQTLFVACRNTEVRYLVRLVAGKLRIGLAEQSVLQALALACAMTPPEQKY
PPEILNASKKMSSDRFKEKYDKIALILKTTYCECPNYNLIIPVLLEDGINTLPSKCKLTP
GIPLKPMLAHPTKGVQEVLTRFEGLKFTCEWKYDGERAQIHVADDGQIKIYSRNQENNTT
KYPDIIKRFKNSRGDEVKNCILDCEAVAWDSEKKQILPFQILSTRKRKDASEEDIKVQVC
VFMFDLLYLNDEPLVKEPFVKRRELLKQHFKEVEGEWKFANSLDASTMEEVEVFLDESVK
GNCEGLMVKTLEKEATYEIAKRSRNWLKLKKDYLDGVGDTLDVIVIGGYIGKGKRTGTYG
GFLLACYDQENEEYQSICKIGTGFKEDDLENHTKFFKDHIVPQAKSYYRFDSSHEPDHWF
EPIQVWEIKCADLSLSPVHRAAIGIVDPEKGISLRFPRFIRIREDKTCEQATSAQDVANM
YNNQEQIKNKTPVSKATEEDFY
NT seq 2949 nt   +upstreamnt  +downstreamnt
atgctaaaaatcctcactacatgctcgcgcttgagctcgctggctctgccgattcgacgg
ctagagctcgcagtcgcagctcgcagtcgatttgttgtttttaattggatacatacaatc
aacagccacaacttgtctgacaaacagaatcagaatgcaacggagaatggcaaacggaaa
agagatagcagcaacagctccagtccaccttcgaagaacgttaaacgtacaaaatcaaag
acggtttccaagacaccttcgccaagtgttaagcctcgcaaactaggagctaccccaaaa
attaagcccagtaagctttcccctggagcatcaaaaaaggcagaaaaaaggcaattgaaa
gatactcctggtaaaaagaaaaagaaggaagaggctaaaaatataaatgatgttgaagag
aaggtaaagaataatcacacagaaaatgatataactgaagagaaaaacaaaaaagaagaa
tctacattttcaatgaaggaatcgaagtccaatgaggcagaaaaagtaaagaagtctgtg
aaaaagaaatggtccaagatagtgcagctggtagattctagtgatgatgagactcaccta
cctttacctggaagtccaaaaaaatcagagactgacaacgaggagaagaagactgaaagt
gtagataagtccagcaacataaataaaaatgtttctgacaacgcttctaataatgacgca
aacgaaagtgcttcggacaatgaagagaaaaatccaagttcgaagaaagagtctacacct
gagaagtcgcaaactccctctaagagtgaaagttcaaagaaagagtctacacccgagaaa
tcacagattccctctaaggatgaaaatccgaagaaagagcctacgcctgaaaaaaagact
aagaaagtgcccaacttttttatgtctaagcaaaaaggcgacgcgaaaggtgacaaagtg
agtaatggaaaaagtgccaaccagtcctacaaccccagcgcatccgtctatcatccgata
gacgatgcgtgctggaaacgaggggacaaaactccatatagcgcattcgcgcgcaccttg
gagatcatcgaagaaactagtgcaagattaaaaataatagaaatattgtcaaattacttc
cggtctgtcatggtcctgagccccgaggatcttttgccgagcgtttatctgtgccttaat
caattagcgccagcgtatgaaggagttgagtttggaatcgctgatacgaatctgatgaag
gcgatagcgcaatgtactggtagaaccctggctcaaattagagctgatgttcaggaggtt
ggcgatttgggaattatagcggaaaatagtaaatctaatcagagaactatgtttcaaccg
gcgccattgacggttcccaatctatactccagattgatggaaattgctcagatgacagga
catgcgtctctatcgaaaaagttggataaaattcagacgctgtttgtagcgtgccgaaat
acagaagtaagatatctagttagattggtagctgggaagcttcgcattggattggcggaa
caatctgttttacaagcattggctttagcttgcgcgatgacaccgccggaacaaaagtat
ccaccagaaattctaaatgcaagcaaaaagatgtcgagtgatcgtttcaaagagaaatat
gataaaatagcacttatattgaaaacaacgtattgtgaatgtccgaattataatcttata
attcctgttttgctggaagacggaattaataccttgccgagcaagtgcaaacttactcct
ggaatacccttgaaacctatgttagcgcatcctactaaaggtgttcaagaagtcctaacg
cgatttgagggtttgaaatttacttgtgaatggaaatatgacggcgaaagagctcagata
cacgttgcggacgatggtcaaataaaaatatacagtagaaatcaggagaacaatactacc
aaatatccagatatcattaagcgattcaagaatagtcgtggtgatgaggtgaagaattgt
atactcgattgcgaggcggttgcttgggatagtgagaagaaacaaattttaccgttccaa
atactcagtacaagaaagcgaaaggatgctagcgaggaggacattaaagtacaagtatgt
gtgtttatgtttgatctgttatatctaaatgatgagccattggtgaaggaaccgtttgtg
aaacgtcgtgagttgttgaaacagcatttcaaggaagtggaaggtgaatggaaattcgct
aatagtttagatgcctcgacgatggaagaggtggaagtttttttggacgaatctgtaaag
ggaaattgcgagggtttgatggtaaagacgttggaaaaggaggcgacttatgagatcgcg
aagcgatcgagaaactggctgaagctgaaaaaggactacttagatggcgtcggcgatacg
ctcgacgtaattgtaattggtggttatatcggcaagggaaagaggaccggcacttatggt
ggtttcctcttagcttgttatgatcaggaaaatgaagagtaccagagcatttgtaagatc
ggtacgggattcaaagaagatgatctcgaaaatcacaccaaatttttcaaggatcatata
gtaccacaagccaaatcgtactatcgcttcgatagcagccatgagccggatcactggttt
gagccaattcaagtttgggagatcaaatgtgccgatctctccctctcgcctgtacacaga
gcggctatcggaatagttgatccagaaaagggaatatctttaaggtttccgcgatttatc
aggatccgcgaggataagacctgcgagcaggccacttccgctcaagacgtggcaaatatg
tataataatcaagaacagataaaaaataaaactccagtatcgaaagccacggaggaagat
ttttattaa

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