Trachymyrmex cornetzi: 108765420
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Entry
108765420 CDS
T11212
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
tcz Trachymyrmex cornetzi
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcz03021
]
108765420
Transcription machinery [BR:
tcz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
108765420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_2
ResIII
DEAD
Ltn1_1st
HEAT_GCN1_C
TPR_DNAAF5
RIX1
Motif
Other DBs
NCBI-GeneID:
108765420
NCBI-ProteinID:
XP_018369634
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MTSRLDRLFILLETGTNAVTKRAAAQQLGEAQRLHPHDLHHLLARVSTLLKSSQWDTRIS
AAHAVQAILAQVPPWNPQPIKKEVSADESKVKRKPSTTRLNLESFDMSRVLARSSHLTGS
EGSEYDLTVSEGEQLSLPNQQEKLAAKLGFHPRLMGVDDLFTVEDLALVQAPCITQTATP
VDDSEGLMSRREMNRAKRKARQSVSKQRSREPDDYRANDDNLNSMNVQSPIGEPATKKII
LEDTISSDTGSKCNISNEQVNGVPDSTGCWPDSIVDWPLESFAESLCQDLFSQKWEVRHG
AATALRELIRLHGKGAGKSTDQTPEEMQESHYEWVIDAALRLLCVLGLDRFGDFVSDQVV
APVRETCAQALGSLFLLVPGGPNTKDTNGVFPGIFSVILKLLEHNEWEARHGAFLALKYL
LAVRDDLLDEVLPQVFPAIMQGLSDPVDDVGAAAASALIPVAHALPRLLKSTELETIVIR
LWQLLKEQDDLAAACNTFMGLLAAILSLPAAHACLTPQPLSQVLPRLWPFLSHSSSSVRK
ATLQTLQTLTGNDSNYSENKKERWGEGGGLVLQETLRHVVQCVLIEHISTIQDVAERVWE
NLVVQSDLELLLHAACPHVSTWLCLAMQPEHVPFNPNLLMTVASSIKGTKNNQMVAYCDG
QLDINSGNSNINANAKSLSELKMYIGGIETVALNIRKANVIQARCRASRMLGLLSHYVVQ
PAPGVIYPPDVPSPALCYAKVLLAHLNSRSALQRTVVGLTMSSWAIVDPLRIPTIPDILS
DRLLACLNECMYYDEIAASFTRLLHESHDYIATLKHYKLMISFEIDSSSVMTLDQIAALA
KRRLPAICTVGTNAGGTENISSCSISSRLKPKLMDSLEERRRALDIGATTMAAQQQSLHV
MSMAALAGAATMLHILPQSPQPLNPLVKPLMEAIKREENEELQKLAAKHLSHLIELCIDR
KPSPNAKISTNLCTFLCSDLEFTPRVCCDTEIYDGILTLNNRQKHAERIAYNRGAGSGLG
SGRGPGRPPTTEIPLEELLACEEPEAKAARTRRRGATFALTAIATLFGAQLPDRLPQLWN
LILPNTLKDVTKQDNIQEDEGNLLIVGLQVLEIMAPSLDKSLLPPVLEVLPRLCSLLTHS
YKAVRHMTSRCIATLATLDTEKTMVHILRSVIPLLDTTGSEKRCSSGIVAPNKVDSVRQG
AAEALTCTVESLGVHVVPYAVLFMVPLLGRMSDQNQSVRLVCSATFATLVQLLPLDPGAI
ADPPDLVQEKAQERKFLDQLLNPHNIPDTELPISVAAELRSYQQQGLNWLNFLNRYHLHG
VLCDDMGLGKTLQTLCILALDHHRNPQAPTSLVVCPPTLTGHWVYEAEKFFKVKDLSVIQ
YAGTPQDREKLRLRVPHHRLVVASYDIVRKDIEFFEAQQWNYCVLDEGHVIKNGKTKSAK
AMKRLYANHRLILSGTPVQNDVLELWSLFDFLMPGFLGSEKQFAAKYSRPILACRESKAG
PKEQEAGALAMEALHRQVLPFLLRRNKEDVLQDLPPKITQDYYCDLSPLQRILYEDFRTR
HSALTNNSSSSNDSQSNVFEALRYLRNVCNHPKLVLSQGHPLYRTVCDMLKQQQSTLAEI
EHGAKLLALKQLLLDCGIGQQQQQQTRNSSVAVNLTAESAHSQEQQLVSQHRALIFCQLK
AMLDIVEEDLLRTHLPTVTYLRLDGSVPATHRHSVVTRFNADPSIDVLLLTTQVGGLGLN
LTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLT
ANTIISTENASLETMATDQLLDLFSLDNGKEKRMDHQEDTISSKLPGLPGISRSVLDILP
ELWEQQQYDDEYDLDSFLSTLKADSQ
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaagattggacagattattcatattgttggagactggaacaaacgcagttacc
aagagagcagctgcgcaacaattgggagaagcacagagattacatcctcatgatctacat
cacttattagcaagagtctctaccttattaaaatcttcacaatgggatactcgaatatcg
gctgcccatgctgtacaagctatacttgctcaagttcctccttggaacccacaaccaatt
aagaaggaagtttctgcagatgaatctaaagtgaaacgcaagccttccactaccagattg
aatttagagtcttttgatatgagcagagttctagctcgtagttcacatcttactggatct
gagggcagtgagtacgacttgactgtatcagagggagaacaattgtcacttcccaatcag
caagaaaaattagctgcaaagttaggttttcatccacgtttgatgggtgttgacgattta
tttactgttgaggatttggctctagtacaggcgccatgtataacacaaactgctacacct
gttgatgactctgaaggattgatgagcagaagagaaatgaatagagcgaaacgcaaagct
cgtcaatcagtatcgaaacaacgatcgcgcgaaccggatgactatcgcgctaatgatgac
aatttaaattcaatgaatgttcaatctccaattggtgaaccagcaaccaaaaaaattata
ttagaggacacaatctcatcagacactggatcaaaatgcaacatatctaacgagcaagta
aatggagtaccagatagtactggatgctggccagattcaatcgtagattggcctttagaa
tcttttgcggaaagtctttgtcaggatttatttagtcaaaaatgggaagtgcgtcatgga
gcagcaacagctttacgagaactcataagacttcatggtaaaggagcaggcaagtctaca
gatcaaactccagaagaaatgcaagaaagccattatgaatgggtgatcgatgccgcctta
cgattattgtgtgtattagggcttgatcgatttggagatttcgtatctgatcaagttgtt
gctccagtacgagaaacatgtgctcaagcattaggatcgctcttcctattagtacctggt
ggtccaaataccaaagatacaaatggtgtttttcctggaatattttctgtaattctcaaa
ctgttggaacataatgaatgggaagcgagacacggtgcatttcttgctttaaaatattta
ttggccgtacgagacgatctgttagacgaggtattgccacaagtgtttcctgctatcatg
caaggattatccgatcctgtcgatgacgtaggtgcagctgctgcaagtgcacttatacca
gtagcacacgctcttccgcgattattaaaatcaacagaattagaaactatcgtaatacgt
ctttggcaattattaaaagaacaagatgacttggctgcagcttgtaacacttttatgggt
ctcttggctgcgatactttcattaccagcggcacatgcttgtttaacgccccagccatta
tcgcaggtattaccacgtttatggccatttctcagccattcaagttcaagtgtacgtaaa
gccacattacaaacattgcaaactttaactggaaacgatagcaattatagcgaaaataag
aaggaacgatggggtgaaggtggtggattagttttacaggaaacattgaggcatgtggtt
cagtgtgtgttaattgagcatattagcacgatacaagatgtggccgaacgtgtctgggaa
aatctagtcgtgcagagtgatctcgaattattgttacatgcggcgtgccctcatgtcagt
acatggctatgccttgccatgcaaccagaacatgtgccattcaacccaaatttgttgatg
acagtcgctagttctattaagggcacaaagaataatcaaatggtcgcctactgcgacgga
caattggatattaatagcggaaacagtaatattaatgcaaatgcgaaatcgttatctgaa
ttgaaaatgtatattggtgggattgaaacagtagcgctgaatatacgaaaagcaaacgtg
atacaggctcgttgtagagcgtctcgtatgttaggattattgtcgcactacgttgtgcaa
cctgcaccaggtgtcatttatccaccagacgtgcctagtccagcgctttgttatgctaaa
gtgctattggcacatcttaattcgcgatcggcgctgcaacgtactgttgtggggcttaca
atgtctagttgggcgattgtagatccattgagaatacccacaataccagacatactcagc
gacagattattggcttgtttaaatgaatgcatgtactatgatgagattgcagcttccttc
actcgactgctgcacgaaagtcacgattacatcgcaactttaaaacattataaattaatg
atatcatttgaaatagattcatccagcgtgatgactcttgatcagatcgctgcactggct
aagagaagacttcccgccatttgcactgttggaacaaatgcaggaggaactgaaaatatt
agtagttgttcaatatcttctagattgaaacctaaattgatggatagcttagaggaaaga
aggcgagcattggacatcggagcgactacgatggcagcacaacaacaatcattgcatgtt
atgtcaatggccgcgctcgctggtgccgctacgatgttgcatatccttcctcaatctcct
caaccacttaatccattagtaaaaccgttaatggaagctataaaacgcgaggaaaatgag
gaactgcaaaaattggctgcaaaacatttgtctcatctaatcgagctttgtatcgataga
aaaccatctccgaatgcaaagatttctaccaatctatgtacattcctatgttctgacctc
gaatttacaccacgggtatgttgcgacactgaaatttatgatggaatactcactttgaat
aatagacaaaaacatgctgaaagaatagcatacaatcgtggtgcaggtagcggactcggc
agcggtagaggtcctggtagaccaccaacgactgagattccccttgaggaattactcgct
tgtgaagaaccagaagccaaagctgctagaacacgtcgtcgcggagctacatttgcatta
acagctatagctactctcttcggtgctcaattacctgatcgcttacctcaactgtggaat
ttgattttaccgaacacactaaaagatgtaaccaaacaagataatatacaagaggatgaa
ggaaatctattaattgtcggtctacaagtattagaaataatggcgccaagtttggataag
tctttgttaccgcctgtgttagaggttttaccacgtttatgcagtctactaacgcattca
tacaaagctgttagacacatgacctcacgatgtatagctacattagctactctagataca
gagaaaacaatggtacacatattacgcagtgttataccactcttggatacaactggcagt
gagaagagatgttcttcaggcatagtagcaccgaacaaagtcgattccgtacgccaagga
gctgcggaagctctaacttgcactgtcgaaagcttaggcgtacatgtggtgccatatgca
gtactctttatggtacctttattgggacgtatgagcgatcaaaatcaatctgtaagacta
gtttgtagcgcaactttcgctacactcgtacaactgttaccgctagatcctggcgcaatt
gcagatccaccagatctagtgcaagaaaaggcacaagagagaaagttcttggatcaactt
ctaaaccctcataatattcctgatacggagctaccgatttctgtagccgcagaattacgt
tcgtatcaacaacaaggcttaaattggctcaattttctgaatcgttatcatcttcacgga
gtattatgtgatgatatgggacttggaaaaacattacaaacgctttgtatcttagcattg
gaccatcatcgcaatccacaggcaccgactagtctagttgtatgcccgccaactctaacc
ggtcattgggtatatgaggctgagaaattcttcaaagtaaaggatttgtcagttattcaa
tatgccggcacgccacaagatcgcgagaaattgcgtcttcgagtaccacatcacaggctc
gtagttgcgagttatgatattgtacgaaaagacattgaattcttcgaagcgcaacaatgg
aattattgtgtgcttgatgaaggccatgtaataaaaaacggcaaaacgaaaagcgccaaa
gctatgaagcgattgtatgctaatcacaggcttatattgtccggcacacctgtacagaac
gatgtactcgaattgtggtctcttttcgattttttgatgccaggcttcctcggcagtgag
aaacaatttgccgctaaatattcccgtcctattttggcctgcagagagtcgaaggcagga
ccgaaagaacaagaggctggagctttagctatggaggctcttcacagacaggtattgccg
ttcttactgagacgaaacaaggaagacgtgctgcaagatttaccacccaaaatcacacaa
gattattactgcgatttatcgcctttgcaacgcatactttatgaggatttccgcactcgt
cattccgctctcactaacaattcctcgtcttctaacgattctcaaagtaacgtgttcgaa
gcgctacgatatttgcgtaacgtgtgcaatcatccaaaattggtgttaagtcaagggcat
ccattgtatcgaacagtgtgtgatatgttgaagcagcaacaaagcactttggcagaaatc
gagcacggcgctaagttacttgcattgaaacaattgctattagattgtggtatcgggcaa
cagcaacagcagcaaactcgcaattcctccgtcgctgtgaatcttaccgcagaaagcgct
cattcccaggaacagcaactagtaagccagcatcgtgctctaattttctgccaattgaag
gcaatgttggacattgtggaggaagatctacttcgcacgcatctgccgacagtaacatat
cttcgtctagatggcagtgtgccggcgacgcacagacattctgtcgtaacgcgtttcaat
gctgatccatcgatagacgttcttttgttaaccactcaagtcggtggtcttggattaaac
ttgacgggagcagatacggtcatattcgtggagcacgattggaaccctatgaaagatctc
caagcaatggatcgcgcgcaccgtataggacaaaagaaagtagtcaacgtataccgcttg
attactagatcgacagtggaggaaaagatcatgggactacaaaaattcaaacttctcact
gcaaatacaataatatcgacagaaaatgcttctttggaaaccatggctactgaccaattg
ttggatctgttctcgttggataacggaaaggagaaaaggatggatcatcaagaggacact
atttcgtcgaaacttcctggcctaccgggtattagccgttctgtgctagatatcctacct
gaactctgggaacagcagcaatacgacgacgaatatgatctcgactcatttttgtctact
ctgaaggctgatagccagtaa
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