Trachymyrmex cornetzi: 108765656
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Entry
108765656 CDS
T11212
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108765656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108765656
Enzymes [BR:
tcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108765656
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108765656
mRNA degradation factors
3'-5' decay
Pan complex
108765656
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
Gemini_BL1
DUF7563
Motif
Other DBs
NCBI-GeneID:
108765656
NCBI-ProteinID:
XP_018369966
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MDYPVLDLFDPSVEPTNHVNCEEEQDLLWDDCNYVVPGGEYVRATEQFGEDFSGAEFHET
RTLLADGGDRFGVSTVTFDTIEELMWMGNQGGHVTSYYGPGLQKYTSFQVHTTQEIRQIH
TVDEGILVLSQSQLRCQLRRGIPIFTHTSVNMNDMQCMLQISPARLLMGGHQDKIIDFNL
TRGKETGLVDVDENGCAILRQHSRLICAGNPAGRIDLRDPNTLSIEHTLDTHSGSLSDFD
VQGNYLVTCGFSNSRQGLTVDRFLMAYDLRQMRALSPVTTMVYPLLLKFLPSYSSRLAVV
SPLGQMQLLDTIYANVQPSVTCLYQVATGGATILSFDVAPTSQCLCFGDLAGSIHLMSTN
TPEPQFNTFSRPTEFADPIETIPSIPFDDDITPYSTIPMVYSDQPLLSDWPEEYLKKVYR
RIPPIDPEILRTMKMQGTIGYAPNPQAFRRNQIPYNLETGTSSRRGLVAKPFVGDSRSKT
DDGTFVAIPKRYRKIELKYSRLGYDDFDFDQYNRTSFCGLEATLPNSYCNAMLQLLYYCE
PVRVALLSHSCQREFCLSCELGFLFHMLDTSRGFPCQAANFLRAFRTVREASALGLILND
PESKKKINLIVLIQSWNRFILHQIHYEILETRKRQQKEEEAARLKSDSKYPPFVYNEQDF
PSILEDLGSRYRSHDDERKKKRKQEEDGKYMWITSKDKTTKKSAEESEVRDDETEISRLF
GSEQMHIHRCLKCGQEATKHSIMLLCNLVYPEIINPSEEVPFTNVLARSLRPEKITPAWC
DNCQKFTPTLQSRQLTKLPQILALNCGLDTQQDKAFWQNQMDIVVQNVLTGKESSPNSSP
VPVTAKPCRYGNNCTRTGCRFRHVGRDSETEKLLTPSSTPSTSSTAPVTSPPSHLYYLHS
WIPHNIEISIEENGEMTVKKISEPRNELNDMFIQTSMMENGQDDKTVQVISENSRNNGEE
NIENCLASKIGNCSITEDDEAVKSTNLEISYNTQRIQYGLSAVVCYIDDKNNEERRNIVA
LLRVGPNYHERSAGNAVSQWYIFNDFCIQPVTPQEAVWFNLDWKVPCVLHYTAIPAPEPT
QFVSPLTYDVFGEDKCIARSGGTRGITFTPLASDEMPKKGELVGIDAEFVTLNQEESELR
SDGKMSTIKPSHMSVARITCIRGIFLFLISRQGPLEGTPFIDDYISTQEQVVDYLTKFSG
IQPGDLDANFSSKHLTTLKSTYQKLRFLVDNGIIFVGHGLKNDFRVINLVVPPEQIVDTV
LLFHLPHHRMVSLRFLTWHFLGKNIQSETHDSTEDARAALELYRKYKELESCGTLTETLK
ELYEVGSQLQWKVRMKILRFYITKCHVYGRYS
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atggactatccggtgttggatctcttcgatccctcggtagaacctacgaaccacgtcaac
tgcgaggaggaacaagatctgctttgggacgattgtaattatgtcgtacctggaggtgaa
tatgtacgtgcaacggagcagtttggggaggacttttccggggccgagtttcacgaaact
agaacattgctcgccgatggcggggatagatttggagtttccactgtcactttcgacacg
atcgaagaacttatgtggatggggaatcaagggggtcacgtaacatcctactatggacct
ggtttacaaaaatatacttcttttcaagtccatacaacgcaggagatacgacaaattcat
actgtagatgagggtatcttagtgttgtctcaaagtcaattgagatgccaattgcggaga
ggcatacctatatttactcatacgtcggtgaatatgaacgacatgcaatgtatgttacaa
atttccccagccagattactcatgggtggacatcaggataaaataattgattttaacctt
actagaggaaaagagactggattagtggatgtagatgagaatggttgtgcgatattaaga
caacatagtaggcttatatgtgctggaaatcctgcgggaagaatagatctcagggatcca
aatacattatcaatagaacatactttggatacacacagtggttccttaagtgatttcgat
gttcaaggaaattatcttgttacatgtggattcagcaatagtcgtcagggacttactgtt
gatcgatttttaatggcctatgatttgagacaaatgagagcattaagtccagtcacaact
atggtatatcctcttttattaaagttcctaccaagttattccagtcggctcgcagtggta
tcgccactaggacaaatgcaactacttgatacaatatatgctaatgtacaaccttcggtg
acgtgtttatatcaggttgctactggcggtgcgacgatattatcatttgatgtagctcct
acatctcaatgtctttgctttggagatttggcgggctctatacatttaatgtccaccaac
accccggaacctcaatttaatacattttctaggcctacggagtttgccgatccaattgag
acaataccatcgattccttttgatgacgatattacgccgtatagtacaataccaatggta
tattcagatcaaccacttctgagtgattggcctgaagaatacttgaaaaaagtttatagg
agaattccaccaatagatcctgaaatcttacgcacaatgaaaatgcagggaacaatagga
tacgcgccaaatcctcaggcttttcgcagaaatcaaataccgtacaatctggaaacaggt
acgtcttcacgacgtggcttagtcgcgaagcctttcgtgggggactcacggtctaaaaca
gatgacggcacctttgtagccatacctaagcgttatcgtaaaattgagttgaaatactca
cggcttggttacgatgatttcgattttgatcagtacaatcgaaccagcttttgcggcctg
gaggctacacttcctaacagttattgcaatgctatgctgcagttgctttactactgcgaa
cctgtaagggtagcattgctctcacattcgtgccaacgagagttttgtctttcttgcgaa
ttgggattcttgtttcacatgctggatacatcacgggggtttccctgccaagctgcaaat
ttccttagggcttttaggacagtacgggaagcgtcagctttaggacttatactgaatgat
ccagagtcgaagaaaaagatcaatctgattgtgctcatacaaagctggaatagatttatt
ctacatcaaatacactacgagattctggaaactaggaagcgacagcaaaaagaagaggaa
gcagcgcgacttaaatcagattccaaatatcctccatttgtttataatgaacaggatttt
cctagcatccttgaggacctcggttctcgatatagaagtcacgatgacgagagaaaaaaa
aagaggaagcaagaggaggatggtaaatatatgtggatcacatcgaaagacaagaccacc
aaaaaatccgccgaagagagtgaagtgcgagatgatgaaacagagatcagtcgtctattt
ggatctgaacaaatgcacatacatcgctgtctcaaatgtgggcaagaagctacaaaacat
tctatcatgttactttgtaacttagtttatccggaaataattaatccttctgaagaggta
ccgttcacaaatgttcttgcccgcagtttaagacctgaaaaaattacacccgcatggtgt
gacaattgtcagaaatttacacctactctccagtctcgacaattgactaaactacctcaa
atactggctctaaattgtggcttagatactcagcaggacaaagcgttttggcaaaatcaa
atggacatcgtggtgcaaaacgtgttgacgggaaaagagagcagtcccaactcgagtcct
gtgcctgttactgcgaagccctgtcgatatggcaacaattgcacgcgaactggatgtcga
ttcaggcacgttggacgcgactcagaaacagaaaaattattaacgccgtcctccacacca
tctacctcgtcgacagcgcccgttacatcgcctcctagtcatttatattacttgcattca
tggataccccacaacatagaaatctccattgaagaaaacggagagatgacagttaaaaaa
atcagcgaaccaagaaacgaattgaatgatatgttcatacagacaagcatgatggagaac
ggtcaagatgacaaaacagtacaagtgatttctgagaactctaggaataacggtgaggaa
aatattgaaaattgtttagcatcgaagattggaaattgcagtataacagaagatgacgaa
gctgtgaaaagtacaaatctggagatctcttataatactcaaaggatacagtatggtctc
agtgctgtcgtctgttatatcgacgataaaaataacgaggaacgaagaaatattgtagca
ctattacgagttggaccaaattatcatgaacgatcggcaggcaatgccgtatcgcaatgg
tacatttttaatgatttctgtatacaaccagtgactcctcaggaagcggtatggtttaat
ctcgattggaaagtgccgtgtgtacttcattatacagcgatacctgctcctgaaccaaca
cagttcgtcagtcctcttacgtacgatgtttttggagaagataaatgtattgctcgcagt
ggtggaactagaggaattacatttactcctctagcatcagatgaaatgcctaagaaagga
gagttggtaggcatcgatgcagaattcgttaccttaaatcaggaagaatccgagcttcga
agtgacggaaagatgtcgactataaaaccgagccatatgtcggtcgcgcgaatcacctgt
atacgcggtattttcttatttttaattagtagacaaggtcctttggagggtacaccattt
atagacgattatataagcactcaggaacaggtggtcgactatttaacaaaattcagtgga
atccaaccgggtgatttagatgcgaattttagtagcaaacatctcacaactctgaaatcg
acgtaccaaaagttgaggttcttagtggacaatggtataatttttgtcgggcacggcctg
aaaaacgattttagggtaataaatttggtagtgccgccggaacaaatagtagatacagtt
ttgttgtttcacttacctcatcatcgtatggtgtcgttacgtttcttgacctggcacttt
ttgggtaaaaacattcagtctgaaactcatgattcaaccgaagatgcgcgagcagcttta
gaattgtatcgcaagtacaaagaactagaaagttgtggtacattgacagaaacattgaaa
gaactttatgaagtgggcagccaattacaatggaaagtaagaatgaaaattcttagattt
tacattactaaatgtcatgtctatggccggtattcatag
DBGET
integrated database retrieval system
