Trachymyrmex cornetzi: 108766364
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Entry
108766364 CDS
T11212
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03013
Nucleocytoplasmic transport
tcz03015
mRNA surveillance pathway
tcz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108766364
09122 Translation
03013 Nucleocytoplasmic transport
108766364
03015 mRNA surveillance pathway
108766364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108766364
03041 Spliceosome [BR:
tcz03041
]
108766364
Enzymes [BR:
tcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108766364
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108766364
Spliceosome [BR:
tcz03041
]
Complex C
Other components
EJC/TREX
108766364
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108766364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108766364
NCBI-ProteinID:
XP_018371121
UniProt:
A0A195DLS0
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQVVDGSGDVPSKKEVKGTYVSIHSSGFRDFLLKPEILRAIVDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEETLKTVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
SKFDLLEI
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgatcttttggattatgaagacgaagaacaaactgagcaggtagtc
gatggaagcggagatgttccatctaaaaaggaagtcaaaggtacatatgtctctatccac
agcagtggatttagagatttccttttgaagccagaaattcttcgtgctattgtcgactgt
ggctttgaacatccatctgaagtacaacacgaatgtattcctcaagcagttcttggcatg
gatatactgtgccaagcaaaatcgggtatgggaaaaacggctgtatttgtattggctact
cttcagcaactggaattaacagagaaccaagtttatgtcctagtaatgtgtcacactcga
gaactggcttttcaaatcagtaaagaatatgagaggtttagcaaatacatgccacatgtg
aaagttggcgtatttttcggtggtttacctattcaaaaagatgaagagacgttgaaaact
gtgtgtcctcatattgttgtcggcacccctggtcgtattcttgctcttgtacggaataag
aaactgaatctaaaacacctgaaacattttattcttgacgaatgcgacaagatgcttgaa
ttattagatatgcgccgggacgtacaggaaatattcagaagcacaccgcacagcaaacaa
gtcatgatgttcagtgccacgctgtccaaggagatacgtcctgtctgcaaaaaattcatg
caagatcccatggaggtctatgtcgatgacgaggcgaagctcactttgaacggtctccag
caacattacgttaaattgaaggagaatgagaagaacaagaagttgtttgaactgcttgat
gttcttgagtttaatcaggttgtcatatttgtgaagtctgtacaaagatgtatggcttta
gcacaacttttaacggaacagaatttccctgcgattgggattcatcggggcatgacgcaa
gaggagcggttatccagatatcaacagttcaaagattttcagaaacgtattttggtggcg
acaaacctgtttggacgtggtatggatatagaacgtgtaaacattgtatttaattatgat
atgccagaagactccgatacatatttgcacagagttgcgcgtgctggtcgttttggtaca
aagggtcttgccattacattagtaagcgatgaaagcgacgcaaagatattgaatgatgtt
caagaaaggtttgacgtaaatattacagaattaccggacgaaatcgatctcgcttcatat
agtaagtttgacttattagaaatttaa
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