Trachymyrmex cornetzi: 108767261
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Entry
108767261 CDS
T11212
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tcz Trachymyrmex cornetzi
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tcz03016
]
108767261
Enzymes [BR:
tcz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
108767261
Transfer RNA biogenesis [BR:
tcz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
108767261
Prokaryotic type
tRNA splicing ligases
108767261
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
108767261
NCBI-ProteinID:
XP_018372515
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINECCWRIKKGFQPNMKVEGVFYVNNTLERLMFDELRNACRPGAV
GGFLPGMKQIANVAALPGIVWRSVGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFERDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHIVEGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYMQVLEKLEQLGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtaaggcaatatcaagaggagcttaaatatttggagaaaataaatgaatgttgt
tggagaatcaagaaaggctttcaacctaacatgaaggttgaaggagtattttatgtaaat
aacacattggagcgattaatgtttgatgaattgcgcaatgcatgtcgaccaggtgcagtt
ggaggctttcttcctggtatgaaacagatagctaatgtagccgctttacctggtattgta
tggaggtctgttggattaccagatgtacactctggatatggctttgctattggtaatatg
gcggcatttgatatggatgatccaaagtcaattgtatcacctggtggtgtaggttttgat
attaattgtggtgttcgtttattacgaacaaatttattcgagagggacgtcttaccagta
aaagaacaacttgcacaaagtatgtttgatcacattccagttggtgttggatctaaagga
attataccaatgaatgcacgggatttagaggaagcgttagaaatgggaatggattggtct
ttgagggaaggttacatttgggctgaagataaagaacattgtgaagaatatggaagaatg
cttaacgctgatccatcaaaagtatcaatgagagctaagaaacgcggacttcctcaatta
ggtacattaggagctggaaaccattatgcagaaattcaagtagtagatgaaatatatgat
aaatgggctgcatgtaaaatgggtattgaagaaaaaggacaaatttgtgttatgattcat
tcgggaagcagaggatttggtcatcaagttgctacagatgcacttgtacaaatggaaaaa
gctatgaaacgtgacaatattgaaaccaatgacaggcaacttgcatgtgctcatattaag
tctcaagaaggtcaagattatttgaaagcaatggcggctgctgctaattttgcttgggtt
aatagaagttctatgacattccttagccgacaggcatttgcaaaacaattcaactcgtct
cccgacgatttagatatgcatgttatttatgatgtgtctcataatattgccaaaatagaa
gaacatatagttgaaggaaaacaaaagacacttttagttcatagaaagggatcaacaaga
gcctttccaccgcaccatcctttgattcctgtagactatcagttaacaggtcaaccagtt
ttaatcggtggtacaatgggtacatgcagttatgttttgactgggacagaacagggtatg
aaagaaacatttggctcgacatgtcatggtgccggccgtgctctttcaagagcaaagtca
cgtagaaatttggattatatgcaagttctggaaaaattagaacaattaggtatatctatt
cgagttgcttcaccaaaattggtcatggaagaagcaccggaatcctataaaaatgtaacg
gacgttgttaatacttgtcacgcagctggaatttccaagaaatgcatcaaattgcggcca
atcgcagttattaaaggataa
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