Trachymyrmex cornetzi: 108767312
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Entry
108767312 CDS
T11212
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108767312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108767312
03041 Spliceosome [BR:
tcz03041
]
108767312
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108767312
Spliceosome [BR:
tcz03041
]
Complex B
Other components
Prp19-related factors
108767312
Complex C
108767312
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
TPR_10
NRDE-2
Mad3_BUB1_I
DHR-2_Lobe_A
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
108767312
NCBI-ProteinID:
XP_018372583
LinkDB
All DBs
Position
Unknown
AA seq
845 aa
AA seq
DB search
MLERKDNEGNVYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTNSKNLNVVYERALKE
LPGSYKLWYNYLRQRVSQLKGRCIIDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEE
CYITRTRQVFDRSLRALPITQHHRIWPLYIHFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIERLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLKKLIEEAARNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRV
KLYEGQPHEIINTYTEAVQTVQPQLAVGKLYTLWVAFGKFYEENGQIEDARVVFEKATLV
PYTKVDDLASVWCEWAEMEIRHGNCKEALKLMHRATTMPARKVAYHDETETVQVRLYKSL
KVWSMYADLEESFGTFKTCKTVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEYCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDDNT
REICLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNASNQISDVTLDAMRLLDSKITSNADNAADVKGVIKF
VRGVTEKDGKPESHVNNPDEINIDIDDENDNDVEIEEIEEDVPIEKQTIPSQVFGSLKAV
QTEED
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagataatgaaggaaatgtatatgcctttaatgaggaggatttacca
tacgaagaagaaattttacgaaatccatattcagtcaaacattggcaacggtatattgat
catcttaaaagtacaaacagtaagaatttaaatgtggtatacgaacgagcattaaaagaa
cttccgggcagttacaagctatggtataattatcttcgacaacgtgtgagtcaactaaaa
ggtcgatgtataatagatccattgtacgaagatgttaataatgcatttgaacgagcttta
gtatttatgcataaaatgccacgtatatggatggattattgtaccctaatgactgaagaa
tgttatataacacgaacgcgtcaagtatttgatcggtctcttagagcgcttcctattacg
cagcatcatcgtatatggccattatatattcattttttaaagaaacataatgtatatgag
actgctgttagagtctttagaagatacttaaagctagcaccagaagatacagaagaatat
attgaatatttaatatcaattgaaagacttgatgaggctgctgtgaaacttgcacagatc
gtcaaccaagacgattttgtatcaaagcacggaaagtctaatcatcaactatggaatgaa
ttatgcgatttaatatcaaaaaatccttcaaagataaagtctttgaatgtagatgctatt
attagaggcggtttaagacgttatacagatcaattgggacctttatggaattcattagca
gattattacgtacgaagtggcctctttgaaagggcgagggatatttatgaagaagctata
cagacagttactactgtcagagattttacacaagttttcgacgcttatgcacaatttgaa
gaacttagtcttaagaaactcatagaagaagcagcaagaaatcctactgaagaagatgac
ataaagttagaattgagactggcgcgattggaacatctcatggaaaggagactattgtta
ctcaattctgtgttgttacgacaaaatccacacaatgtagcagaatggcataaaagagta
aaactttatgaagggcaaccacatgagataattaatacatatacagaagcagttcagaca
gtgcaaccacagttagcagttggtaaactatacacattgtgggttgcgtttggcaaattt
tatgaggaaaatggacaaatagaagatgctagagtagtatttgaaaaagcaactcttgta
ccatataccaaagtagacgatcttgcttcagtatggtgtgaatgggcggaaatggaaatt
agacatgggaactgcaaagaagctttaaaactcatgcatcgtgccactacaatgccagct
agaaaagtagcatatcatgatgaaacagaaacggtacaagtgagattatacaaatcttta
aaagtatggtccatgtatgcagatttggaagaaagtttcggtacatttaagacttgtaaa
acagtatatgacaaaataatcgatttgaaaatcgcaactcctcaaattatcatcaattat
ggactgtttttggaagaaaataattactttgaggaagcatttagggcatatgaaaaaggt
attgcgctgtttaagtggcctaatgtttatgacatttggaatacgtacctcacaaaattt
ttaaaacgttacggtggtacaaaactagaacgtacaagagatctgtttgagcaatgttta
gaatattgtccaccaaagtatgccaaagctttatatttgttgtatgcaaagctagaagaa
gaacatggtttagcaagacatgccatgtctgtatatgaacgtgcgacgaatgctgtcctc
ccagaagaaagattcgacatgttcaatatatatattaagaaagctgccgatatatatggt
gtaccaaaaactcggcaaatatatgaaaaggctatagaagtcttgaatgatgacaacaca
agagaaatatgtttacgatttgcagaaatggaaaccaaattaggagaagtagatagagcg
agagcgatatatgcgcattgtagccaaatatgtgatccaagggtcacgtccaacttttgg
caaatttggaaagaatttgaagtcagacatggaaatgaggacacaatgcgtgaaatgctt
cgaatcaaacgtagcgtgcaagctatgtataatactcaagtaaacatgatgtccgcacaa
atgttgaataatgcatccaatcaaatatcagatgttacgctggatgctatgcgtttatta
gatagtaaaattacatcaaatgcagacaatgctgctgatgtcaaaggagttatcaaattt
gtacgtggtgtaacagaaaaagatgggaaaccagaatctcatgtgaataatccagatgag
attaatattgacatagatgacgaaaatgataatgatgtagaaatagaagaaatagaagaa
gatgtaccgattgagaaacagactataccatcacaagtatttggtagtttaaaagcagtc
caaactgaagaggattga
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