Trachymyrmex cornetzi: 108767564
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Entry
108767564 CDS
T11212
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108767564
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tcz03041
]
108767564
Enzymes [BR:
tcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108767564
Spliceosome [BR:
tcz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108767564
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
SLFN-g3_helicase
Flavi_DEAD
Cas3-like_C_2
nSTAND_NTPase5
T2SSE
Motif
Other DBs
NCBI-GeneID:
108767564
NCBI-ProteinID:
XP_018373005
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MLSKMSKYRREESSSEDTDSEEERRKKDIKERDSFASRLRAKDESKRRNVVTLPGSGAAE
AAKRLKIIETDTKDKLIPKLRIESRRKYLEKRKEDKVAELEADILDDEYLFDENILTEKE
KHERAHKKQLLHLAKEHEKARELERMQRYHMPLEKGKTEPEPDTMEKEPPQSEQSKWESD
QMSSAVFRFGAKDRKAQQEYNLLMEDEMIEFVQVLHMPGYKDKKRVESPPAHVKSLQTIQ
ETKKSLPIYPFRKDLIHAIKDHQVLIIEGETGSGKTTQIPQYLYESGFADDGKIIGCTQP
RRVAAMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLAS
YSVMIIDEAHERTLHTDILFGLVKDIARFRPNLKLLVSSATLDATKFSEFFDDAPIFRIP
GRRFPVDIYYTKAPESDYIEACVVSIIQIHVTQPSGDILVFLTGQEEIETCQEMLQERVR
RLGSKLAELLILPVYANLPSDMQIKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPG
YAKQNNFNPRTGMESLIVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVP
EIQRINLGNAVLTLKALGIDDLMHFDFLDPPPPETLILAMEQLYALGALNHRGELTKLGR
RMAEFPLDPMMAKMLLASEKYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADAARKNFHV
PGGDHLTLLNVYNQWAQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGI
TETINIRKAITAGYFYHVARLSKGGCYKTAKHNQQVAIHPNSSLFQDLPRWLLYHELVLT
TKEFMRQVTEIESKWLLEVAPHYYKPKEVEDSTNKKMPKVAGRSRPDGTN
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgctttccaaaatgagcaaatacagacgggaagaatcctcgagtgaggatacagacagt
gaagaagaacgtcgcaagaaggatatcaaggaaagagatagctttgctagtcgtctcaga
gccaaagatgaaagtaaaagacgtaatgttgttacgctccctggatccggcgctgccgaa
gcagcaaagagacttaaaattatagagactgatacgaaagataaactgataccaaaatta
agaatcgagtctcgtaggaaatacctggagaaacgtaaagaggacaaagttgcagaacta
gaagccgatattcttgatgacgaatatctgtttgatgaaaacattttaacagaaaaagaa
aaacatgaaagagctcataagaaacagttgctacacttggcaaaggagcatgagaaggca
agggaactcgagcgtatgcaacgttatcatatgcctcttgagaagggtaaaacggagcca
gaacctgatacaatggaaaaggaaccaccgcaatctgaacaaagtaaatgggaatcagat
cagatgtcgtcagctgtttttcgttttggtgctaaagataggaaagctcaacaagaatat
aatcttctcatggaggatgagatgatagagtttgttcaagtgctccatatgcctggatac
aaggataagaaacgggtagaaagtccacctgcacatgttaaaagtttacaaacgatacag
gagacaaagaaaagtttgcctatttatcctttcagaaaggatttgatacatgctatcaaa
gatcatcaggttttaataatagaaggtgaaacaggatcaggtaagacaacacagattcca
caatatttgtatgaatctggatttgcagacgacggtaagattattggatgcactcagcca
cggcgagtagctgctatgtcagtggctgcgagggtagctcacgaaatggccgttaagttg
ggtaatgaagttggctatgctattcgttttgaagattgcacatcacaacgtacccgtatc
aaatatatgactgacggtacattacaccgagagttcctcagtgaacccgatttagcgtcg
tacagcgtaatgataatcgatgaagcgcacgaacgtactttgcacactgacattttattt
ggattggtgaaagatatcgcgaggtttcgtcctaatttgaagctgttggtatcatcggct
acattggatgctacaaaattcagtgaattctttgacgatgctcctatattcagaataccc
ggacgtcgttttcctgtcgacatttattacacaaaagcgccggaatcagattatattgaa
gcatgtgtagtttcgattattcagattcacgtaacgcaaccgtcgggtgatatattggta
tttctgactgggcaggaggaaatcgagacgtgtcaggaaatgttacaagagagagtgaga
agactagggagcaaattggcagaacttttaattttacctgtttatgcgaatctaccaagc
gatatgcagataaaaatatttcaaccaactccacctggcgcgagaaaggttgtactggcg
actaatatagcggagacttcattaactatagacaatatagtatacgtgatagatcctggt
tatgcgaagcagaataatttcaatccacgcaccggcatggagagtttaatagtcgtgccg
atcagtaaagcgtccgcgaatcagagagcaggacgcgccggaagagtggcacctggaaag
tgctttcgtttgtatacagcttgggcttatcagcatgagcttgaagataacaccgtgcct
gaaatacaacggattaatttgggtaatgcagtgcttactttgaaagctctcgggatagat
gatttgatgcattttgatttcttggatccaccaccacccgaaacgctgatcttggcgatg
gaacagttgtacgcactaggtgcgctgaatcatcgtggagagctaacaaaacttggacgt
agaatggccgagtttccattggatccaatgatggcaaagatgctgttagctagcgagaag
tatcgctgctcggaagaggtggctaccatcgccgccatgctttcggtgaatggtgctatc
ttttatagaccgaaggataaaattatacacgcggatgctgcacgcaagaatttccatgta
cctggcggtgatcatctgactctccttaatgtatacaatcaatgggcacagagcgatttt
agtacacattggtgttacgaaaatttcatacagcacagatccatgaaacgggcgagagat
gttagagaacagctagtaggtttgatgcagcgtgtcgagatggaattagtctcgggaatt
acagaaacaattaatattagaaaggctattacagctggttatttctatcacgtggcacgt
ttatcgaagggaggttgttacaaaactgcaaagcataatcaacaagtcgctatacatcca
aatagttccctgttccaagatcttccgcgttggcttctttatcacgaacttgtcctcact
accaaggaatttatgcgtcaggtgacagaaattgaaagcaaatggttgctcgaagtggca
ccccattattataagcctaaagaagtagaagattcaacgaacaaaaagatgccgaaagtt
gcaggcagatcacgaccagatggaacgaattaa
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