KEGG T11212: 108769161

Trachymyrmex cornetzi: 108769161

Entry

108769161         CDS       T11212

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 4

K14404

cleavage and polyadenylation specificity factor subunit 4

Organism

tcz Trachymyrmex cornetzi

Pathway

tcz03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:tcz00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108769161
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tcz03021]
    108769161
   03019 Messenger RNA biogenesis [BR:tcz03019]
    108769161
Transcription machinery [BR:tcz03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     108769161
Messenger RNA biogenesis [BR:tcz03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     108769161

SSDB

Motif

Pfam:

zf-CCCH zf_CCCH_4 Torus zf-CCCH_3 zf-CCCH_2 zf-CCHC zf-CCCH_4 zf-CCCH_12 zf-CCCH_RBM22 Nab2-like_zf-CCCH_ zf-CCCH_DUS3L zf-C2H2_ZNF592 zf-CCHC_3

Other DBs

NCBI-GeneID:

108769161

NCBI-ProteinID:

XP_018375494

UniProt:

A0A195EKS4

LinkDB

Position

Unknown

AA seq 290 aa
MECIVANVEHMRFDIEVALDEQYGALPLPFTGMDKSIAAVCQFYPKGSCNKGASCPFRHV
RGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPETK
VRDCPWYDRGFCRHGPLCRHRHVRRVLCMAYLAGFCPEGPNCKFMHPRFELPAIQDMQPK
EGKKVMITCHFCGEGGHKAIYCNKMPPDVREAQVRQELDNDSRSSHHHMNIHNGPPPSRG
PQKPLEEVTCYKCGQKGHYANKCPKGHLAFLSHASIHASGGGGQNQNYRR

NT seq 873 nt +upstreamnt +downstreamnt
atggagtgtatagtagcgaatgtggaacatatgcgatttgatattgaagttgctcttgac
gaacagtatggtgctcttccgttacctttcaccggcatggacaaatcaattgccgcagtg
tgtcagttttatccaaaaggcagttgtaataaaggagcttcgtgtcctttcaggcatgtt
cgaggcgatcgcacgatagtatgtaaacattggttaagaggtctttgcaagaagggtgat
cagtgtgaatttctacatgaatatgatatgacaaaaatgccagaatgttatttttattct
agattcaatgcatgtcacaataaagaatgtccatttttacacatcgatccagagacaaaa
gtcagagattgtccatggtacgatcgtggtttttgtaggcatggtcccttatgtcggcat
cggcatgtcagacgtgttctatgtatggcttatttagcaggtttttgtccagaaggacca
aattgtaaatttatgcatccaagattcgaattaccggcaatacaagatatgcaaccaaag
gagggcaaaaaagttatgattacttgtcacttttgtggagaaggaggtcataaagcgatc
tattgcaacaaaatgccacccgatgtacgggaagctcaagttagacaggagctcgacaat
gattctcgttcatcgcatcatcatatgaatatacataatggaccaccaccgtcacgaggg
ccgcaaaaaccactcgaagaagtgacgtgttacaaatgtggacaaaaaggtcattatgcc
aataaatgtccaaaaggtcatttagcatttttgagccatgcaagtattcatgcaagtgga
ggtggtggacaaaatcagaattatcggagatga

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