Trachymyrmex cornetzi: 108769876
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Entry
108769876 CDS
T11212
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tcz Trachymyrmex cornetzi
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tcz01009
]
108769876
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108769876
04131 Membrane trafficking [BR:
tcz04131
]
108769876
03036 Chromosome and associated proteins [BR:
tcz03036
]
108769876
Enzymes [BR:
tcz01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108769876
Protein phosphatases and associated proteins [BR:
tcz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108769876
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108769876
Membrane trafficking [BR:
tcz04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108769876
Chromosome and associated proteins [BR:
tcz03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108769876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
108769876
NCBI-ProteinID:
XP_018376604
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MTEPTVNLNLFAAAKQLADSEIELIKVIENSTKCQRTTTNMLSNAKKTKKPGKSKNARPS
AALLAAKQEAAKRQLLSDQKSNNNFVPDIYQKAIDAYKMIRKETGLVFDRSMAEHECIWD
PNYPECPARFTRVLQRCEELGLVQRCKLIEPRRATENELLSKHSQKQIDILKATDDSTDS
ENLELLSSKYDCVYIHPSTYRLSLLAVGSTINLVESVCKGEIQNGMAIIRPPGHHAMKSE
YCGYCFFNNVALAVEKALSSGLANRILIVDWDVHHGQATQQMFYNDPRVVYFSIHRYEHG
EFWPNLRESDFHYIGEELGEGYNFNVPLNKTGMTNADYIAIFQQVLLPMAYEFQPDLIIV
SAGYDAALGCPEGEMLITPACYSHLLSSLLSLANGKVAVVLEGGYCLKSLAEGAALTLRT
LLGDPCPVLQTLDLPSLSIRNTILNVIYSHKPYWKCYQYQETHSINSVTHSKEEIANRHV
VTMTFKGSEVKLEKYDTRNCYPVQSKETLEVVEKKLDELIQLTNLYKAPHKVCIVYDEKM
QKHCNISDNSHPEKPNRISSIYKNHEEHGLLQRCYLLQGRSATIEELSLIHSIDHIDDIK
RTSTLKLKELQKQASDYNSVYLHSDTWSNACISAGSLLQVVDAVLNGECQSGVAIVRPPG
HHAEKDIACGFCIFNNVAVAAMYAVQFYHLKRVLIVDWDVHHGNGTQSIFEEDPKILYIS
VHRYDNGSFFPNSKLANYTSTGLNAGEGFNVNIPWNKKGMGDAEYIAAFQQVVIPIAYQF
NPELVLISAGFDACIGDTLGGCLVSPELYGHLTHWLSSLANGRIILSLEGGYNINSISHA
MTMCTKALLGDPLPMLDPNLIPCTSAINSINNVLKTHKKFWSNLQYGMSLPKERLLSKFK
TIPNKREEQGKNADKLKQIFMEPKIALEGIESEKLDLNLAIDKNCLNLVTDEEISKLTCE
VENIKIKNFELHAMKNEAVEAKKNPELKQSKAKNLDVSQSIQKCVNETHQSRGSQQGNSD
IREDHDDEGAASSQSGTRPITLSEYLSDNLQALTAGEMFAIVPLQDCPHLFTVNEVPPGG
IDVTTPCAECASIAENWICLQCYTVHCARSINQHAMQHAEEFEHPITLSFSDISVWCYGC
ETYVDNPRLYAARNAAHQSKFNEALPWTYSESA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacccacggtgaacctgaatctgtttgctgctgctaaacaactagcagacagt
gagatcgaactgataaaagtgattgagaattctaccaagtgccaaagaactacaacaaat
atgctttcaaatgcaaagaaaacaaagaaacccgggaaatcgaaaaatgctcgtccatca
gctgcactattggctgctaagcaagaggcagcaaaacgacagctgctgtcagaccaaaaa
tccaacaacaattttgtaccagacatatatcagaaagcaatcgatgcatacaaaatgata
cgcaaggaaactggtcttgtatttgatcgaagcatggctgagcacgagtgcatctgggat
ccaaattatcccgagtgtccggccagatttacacgagttttgcaaaggtgcgaggagttg
ggcctggtgcagagatgtaaacttattgaaccgagacgtgccacagagaatgagcttctg
agtaagcacagtcagaaacagattgatattttgaaggcaacagatgactctacggattct
gagaatttggagttgctgtcgtccaaatacgattgtgtctatatccacccgtctacatat
agattatctttattagctgtgggctcaacaatcaatttagtagaaagtgtctgtaaaggc
gagatacaaaatggcatggctattatcagaccacctggtcatcatgcaatgaaatcggaa
tactgcggttattgttttttcaacaatgtagctctggcagtagagaaagctctgagttcc
ggtttggcaaacaggattttaattgtggattgggacgttcatcatggacaagcaacgcaa
caaatgttttacaatgatccacgcgtagtttacttttcgatacatcgttatgaacatggc
gaattctggcccaacttaagggaatctgattttcattatattggggaggagctcggagag
ggttacaacttcaatgtacctttaaataaaaccggcatgactaatgctgattacatcgcg
atcttccagcaagttttattgccaatggcttacgaatttcaaccggatttgataatagta
tcagcaggttacgatgcggctctgggttgtccagagggtgaaatgctgataactccagca
tgttattcacatttgctatcgtcgttgttaagtctggcaaatggaaaagtcgctgtggtt
ttagagggtggttattgcctgaaatcattagcagaaggtgcagcattgactttaagaacg
ttattaggagatccatgtccggttttacaaacacttgatttaccatcattaagtatacgt
aatactatcttaaatgtaatctactcacataaaccatactggaagtgttatcaatatcaa
gagacacacagcattaatagtgtaacacacagtaaagaggagattgctaatcgacatgta
gttacgatgacgtttaaaggcagtgaagttaaattagaaaagtatgatactcgaaattgc
tatcctgtacaaagcaaagaaacattagaggtcgtggagaaaaaattggacgaattgata
caattaacaaacttgtataaagcacctcataaagtatgtatcgtctatgatgaaaagatg
cagaagcattgcaacatttctgacaattctcatccagaaaaaccaaatcgcatttccagc
atttataagaatcacgaggaacatggcttgttacagcgatgttatttattacaaggaagg
agtgcaacaatagaagagttatccttgattcattcaatagaccacatcgatgacatcaaa
aggacatcaactttaaaactcaaggaattacaaaagcaagcctcagattacaattctgtt
tatcttcattctgacacatggtcgaatgcctgtatatctgctggctctcttttgcaagta
gtggacgcggttttgaatggggagtgtcaatccggagtagccattgtaaggccgcctgga
caccatgctgaaaaagacatcgcatgtggtttttgtatatttaataatgttgccgtggct
gcaatgtatgctgtacagttttaccatttaaagagggtgctgatagtagattgggatgtg
caccatggaaatggaacgcaatctattttcgaagaagatccaaaaatcctttacatctct
gttcatcgttacgataatggtagcttctttccaaattccaagcttgctaattatacaagc
actggcttaaacgcaggcgaaggattcaacgtgaacataccgtggaacaaaaaaggaatg
ggagatgctgaatatatagcagcttttcagcaagttgtaatacctatcgcttaccaattt
aatccagaactagtcctaatttcggccggatttgatgcctgcattggtgatacacttgga
ggttgtctcgtaagtccagaactctatggccatttaacccattggctctcatccctggcc
aatggtcgtataatcctaagtctcgaaggaggttacaatatcaactccatctctcacgcg
atgaccatgtgtacaaaggcactcctgggcgatcctttaccgatgctggatcctaatctc
attccttgcactagcgcgatcaattctatcaataacgtactgaagactcacaagaagttc
tggtccaacctgcagtatggaatgtccttaccaaaagagagactactttccaaatttaag
acaattcctaacaaacgcgaagagcaaggaaaaaatgcggataaactgaaacaaatattt
atggaaccaaagatcgccttagagggaattgagagtgaaaaactagacttgaacctcgcg
attgataagaactgtttgaatctagtgacggacgaggaaatttcgaagttaacgtgcgaa
gtggagaatattaaaataaaaaatttcgaattacacgcgatgaaaaacgaagcggttgaa
gcgaaaaaaaatcctgaattgaagcagagcaaagcgaaaaatctagatgtgtcacaaagt
atacaaaaatgtgtaaacgagacgcatcaatcaagaggcagccaacaaggaaattctgac
atacgcgaggaccacgatgatgaaggcgcagcatcttcacaatccggaacacgacccata
actctatcggaatatctctctgacaatctgcaggctctgacagcaggagaaatgttcgcg
atcgtgcccctgcaggactgtccacatctgttcacagtcaacgaggttcccccaggtgga
attgacgtaactacaccgtgtgctgaatgtgccagtatcgcagaaaattggatttgcttg
cagtgctatactgtgcactgcgcccgcagtattaatcagcacgcgatgcagcacgcagaa
gagttcgaacatcccatcacgctcagctttagcgatatttctgtctggtgctatggttgt
gaaacctacgtcgataatcctcgattatatgcggcaagaaacgcagctcatcaaagcaaa
ttcaatgaagcacttccctggacttatagcgaaagtgcataa
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