Trachymyrmex cornetzi: 108770738
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Entry
108770738 CDS
T11212
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tcz Trachymyrmex cornetzi
Pathway
tcz03018
RNA degradation
tcz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tcz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108770738
09123 Folding, sorting and degradation
03018 RNA degradation
108770738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tcz03019
]
108770738
03041 Spliceosome [BR:
tcz03041
]
108770738
Messenger RNA biogenesis [BR:
tcz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108770738
mRNA degradation factors
5'-3' decay
Lsm complex
108770738
Spliceosome [BR:
tcz03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108770738
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
BPL_C
Hfq
LSM14
Motif
Other DBs
NCBI-GeneID:
108770738
NCBI-ProteinID:
XP_018377947
LinkDB
All DBs
Position
Unknown
AA seq
91 aa
AA seq
DB search
MTASVSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEAT
PEGRRVTKLDQILLNGSNITMLVPGGEMPDT
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgactgcttcagttagcaccaatccgtctacattattacctttggaactagttgataag
tgtatcggttctcgaatacacattattatgaaaaatgacaaggagattgtaggaactttg
caaggttttgatgattttgtcaacatgttactggaagatgtaacagaaagtgaggcaacc
ccggaaggtcgcagagttacgaagttggatcagattcttctcaacggcagcaatattact
atgttagtgcctggtggtgagatgccggatacataa
DBGET
integrated database retrieval system
