Teleopsis dalmanni (Malaysian stalk-eyed fly): 119665992
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Entry
119665992 CDS
T09311
Name
(RefSeq) 5'-3' exoribonuclease 1-like
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03008
Ribosome biogenesis in eukaryotes
tda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119665992
09123 Folding, sorting and degradation
03018 RNA degradation
119665992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119665992
03009 Ribosome biogenesis [BR:
tda03009
]
119665992
03016 Transfer RNA biogenesis [BR:
tda03016
]
119665992
03036 Chromosome and associated proteins [BR:
tda03036
]
119665992
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119665992
mRNA degradation factors
5'-3' decay
5' exonucleases
119665992
Ribosome biogenesis [BR:
tda03009
]
Eukaryotic type
Pre-60S particles
RNases
119665992
Transfer RNA biogenesis [BR:
tda03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119665992
Chromosome and associated proteins [BR:
tda03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119665992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN1_D2_D3
XRN1_D1
rve_3
Motif
Other DBs
NCBI-GeneID:
119665992
NCBI-ProteinID:
XP_037931182
LinkDB
All DBs
Position
1:complement(126675436..126689669)
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AA seq
812 aa
AA seq
DB search
MCAKLQLCAKLIYLTPYQHNLQYFLEDILETIISANGLQLTAEALKYFCLKLGIKHITTA
PFHAASNGLAERFVRSFKTAVKKNIDDGLSLKFAVSKYLATYRAMPNAEGKSPAELLHGK
VESTFLDDSDCSLDEPQHIAEEFEMHKRNYYMEKLNQNNITSQQKREYAYRYITALQWNL
DYYYRGVQSWDWYYPHHYAPFISDLKDFKDFKIEFNIGEPFFPYEQLLAVLPAASKQLLP
LAYQDLMTNSNSEIIHFYPKTFDTDLNGKKHEWESIVLIPFIDEKLLINAMKPCSVNLTP
QEIERNKFGPMLKYDYTSSAQGKISGIYTMEAIQKVFCFEKEVWSHEIAISSSDTVCTKS
SNASNNVFFPGFPTMKHLNYKFEFKPQRVKVFDQPSRGDNLILKPQKRNEFDDVYKVAEK
FLGQTVYIGWPHLMKSTVATVFNNDVIISKTGIKENDPKQFQLNVKSTQEHLLMRMGIEL
EDYDVMMQVHAYVGKAYICGAMGKIVQNDVWSPLTTNYPVQCVVPEISLIQNKNIGVQKI
EEFFPVGTLTFYLGNKYHACAGEVIDPMTAYINGRICLRILSYKYPDFTEAIELHNGLKE
NYVNSYNASSIIGISPKCLGRITGTVLVVAGVRRNKNLENVPKLNIGLQLKFPKQQEERI
GYARCLRNQWHYSSKAIELVKNYFIQYPQVFEYLNLLSDKNGLIFESDIFPDNLGEHYIE
KIVTWIKSQDHNTSDRIVCGSEVAEKGSVEMVIRIINDIKNHPFKEIKAYVKPHLLIKPD
VTLPLMYKSPKPIKLFDRVVIVKTTYMVNIIL
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcaaaattgcaattgtgtgcaaaattgatatatttgacaccatatcagcataat
cttcaatattttctggaagatatactagaaaccatcataagtgccaatggtttgcaatta
acagctgaagcattaaaatatttttgcttaaaacttggaatcaaacatataacaacagcg
ccatttcatgcagcctcaaacgggttagccgaacgattcgtcagatcttttaaaactgct
gttaagaaaaacattgacgatggattgtctctcaaattcgctgtatcaaaataccttgca
acatatcgtgcaatgccgaatgctgaaggtaaatcacctgctgaacttttacatggaaaa
gttgagtccacttttttagatgacagtgattgttcactggatgaaccgcaacatatagcc
gaagaatttgaaatgcataaacgaaactattatatggaaaaactaaatcaaaataatata
actagtcagcaaaagcgggagtatgcttaccggtatataacagctttacaatggaattta
gattattattaccgtggtgttcaatcatgggactggtattatcctcaccattatgcgcct
tttattagcgaccttaaggattttaaagattttaaaattgaatttaatataggtgaacca
tttttcccatatgaacagttactggctgttttacctgctgcaagcaaacaattactacca
ttggcataccaagatttaatgacaaattccaatagtgaaattatacatttttatcctaaa
acttttgatacagatcttaatggcaagaaacatgaatgggaatccatagtgcttataccg
tttatagatgagaaacttttaattaatgctatgaaaccttgtagtgttaacttaacacca
caagaaattgaacgtaataaatttggtcctatgctgaaatatgattatacttcatcagca
cagggaaaaatatctggtatatatacaatggaggcaattcaaaaagtgttttgttttgag
aaagaagtttggtcacatgagattgctatatcatctagtgatacagtttgtacaaaatca
tcaaatgcatcaaataacgtgttcttccctggttttccaaccatgaaacacttaaattat
aagtttgaatttaaacctcaacgtgttaaagttttcgatcaacctagtcgtggcgataat
ttaattttaaaaccacaaaaacggaatgaatttgatgacgtttataaagtagcagaaaaa
ttcttagggcaaactgtatatataggatggccacatttaatgaaatcaacagtagcaact
gtatttaataatgatgtaattataagtaaaactggaattaaagaaaatgatccaaaacaa
ttccaactaaatgttaagtcaacacaggaacatttgttaatgcgtatgggtatcgagctt
gaggactatgatgttatgatgcaagtacatgcttatgttggtaaagcatatatatgcggc
gctatgggaaaaatagttcaaaatgacgtatggagccctttaacaaccaactatcctgtt
cagtgtgttgttcctgaaatatcactaatacaaaacaaaaacattggcgtacaaaaaata
gaggaattttttcctgtaggcacattaacattttatttaggaaacaaatatcatgcatgt
gcaggtgaagtaatagatcctatgacagcttatataaatgggcgtatatgtttaaggatt
ctatcttacaaatatccagattttactgaagcaatagaactccataatggtttaaaagaa
aattatgtaaattcatataacgcatcatctatcataggaataagtccaaagtgtttaggt
cgtataactggtactgttttggttgtagcaggtgtaagaagaaataagaatctagaaaac
gtgcctaaattaaatattggtctacaattaaaattcccgaaacaacaagaagaacggatt
ggatatgcacgctgtttgagaaaccaatggcattattcatcaaaagcaatcgagcttgtt
aaaaattattttattcaatatccccaggtttttgaatatttaaatttattatcagacaaa
aacggattaatatttgagtcggacatatttccggataatttgggagaacattatattgaa
aagattgtgacatggataaaatctcaagatcataatacatcagatagaatagtatgtgga
tctgaagttgcagaaaaaggttctgttgaaatggttattcgaatcataaatgatataaag
aatcatccattcaaagaaattaaagcatatgtaaagccacacttactaataaagccagat
gtgacgctaccgttaatgtataaatcacctaaaccaattaaactctttgacagagttgta
attgttaagacgacatatatggtaaatataatattataa
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