Teleopsis dalmanni (Malaysian stalk-eyed fly): 119671322
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Entry
119671322 CDS
T09311
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03013
Nucleocytoplasmic transport
tda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119671322
03015 mRNA surveillance pathway
119671322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119671322
Enzymes [BR:
tda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119671322
5.6.2.5 RNA 5'-3' helicase
119671322
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119671322
mRNA cycle factors
Common to processing body (P body) and stress granule
119671322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NAT10_TcmA_helicase
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
ATPase
AAA_22
nSTAND3
AAA_16
SRP54
nSTAND_NTPase5
DUF7953
zf-B_box
Motif
Other DBs
NCBI-GeneID:
119671322
NCBI-ProteinID:
XP_037937831
LinkDB
All DBs
Position
1:201081246..201086398
Genome browser
AA seq
1177 aa
AA seq
DB search
MTKSTKNNKKKSATMSVDAAFGPSSQTLTFLDTEENDLIGADTQASDFDFRDFTLPSQSQ
ISQQDPLPSVAGSSGHPFGRKIELPNKLSTITNGLAELQFEEEDEETSLTSVKELPPHAC
KYCGIHDKETVVMCNNCKKWFCNGRGSTSGSHIINHLVRAKHREVTLHSDGPLGETVLEC
YSCGVRNVFLLGFIPAKADSVVVLLCRQPCAAQNSLKDLNWEQDQWKPLISDRCFLSWLV
KTPSEQEQLRARQISAAQINKLEELWKENIDATFQDLEKPGIDTEPAQVLMRYEDGYQYE
KILGPLVRLEADYDKKLKESQTQENIEVRWDIGLNKKNIAYFTLAKTDSDMKLMHGDELR
LRYVGEMHKAWSEVGHVIKVPDNYGDDIGLELKASPDAPVKCTSNFAVDFIWKSTSFTRM
TRALKLFAMDRNSVSNFIYSRLLGHGRQDGNDEVLFRSQPPKLYTAPNLPDLNRSQVYAV
KHALQRPLSLIQGPPGTGKTVTSATIVYQLVKQHGGPILVCAPSNTAVDQLTEKIHLTNL
KAVRVCAKSRESIDSPVSFLALHNQIRCMETNSELKKLQQLKDETGELSSADEKRYRSLK
RGAENQLLEAADVICCTCVGAGDARLARIKFSSILIDESMQSTEPECMVPVVLGAKQLIL
VGDHCQLGPVVMCKKAARAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEG
SLQNGVCAEDRKLKIDFPWPQPDRPMFFLVTQGQEEIAGSGTSYLNRTEAANVEKITTRF
LKAGVRPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDLIIMS
CVRSNERQGIGFLNDPRRLNVALTRSKYGTIIVGNPKVLSKQALWNHLLNFYKDRKVLVE
GSLNNLKESLIQFQKPKKIVNTLNMGAHFMNTIMANAKEVIVPGSVYDRTSNYGISSGPS
NLPGNSFGLGFNTGMGGGNFNSNQGMLMSQNYMTGPSYSGGRVPVGNATQNAVSNYQQWG
NQHDSISYVSPERVRATLNNMPVPVGMFMNMGNMPRRFYNQQAVQAAVKQGRNGGGNGQT
KTNGSNGSTRNQQGGKGRPILANSFTSVISQASASPLTQNMSQHGGFALSQQPDLSQDFG
QISQIDVLSQDISGAQLQSDRLSLGFNSQSQLTQPPY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaagcactaaaaataataaaaaaaagtccgccacgatgagtgtagatgcagca
ttcggtccaagttctcagactctgaccttccttgacactgaggaaaatgatttaattggt
gcggatacacaagcatctgattttgattttcgcgattttactttaccatctcagtctcaa
atatctcaacaagatcctttaccaagtgtagcaggttctagcggccacccattcggtcga
aaaatagaattgcccaataagttgagtacaattactaatggattggctgaattacagttt
gaagaagaagatgaggaaacttctcttacatctgttaaggaattgccaccacatgcctgc
aaatattgtggcatccacgacaaggaaacggtagtcatgtgcaataactgtaaaaagtgg
ttttgtaatggtcgaggcagtacatctggttcccatatcattaatcacttagtacgtgct
aaacatcgtgaagtcaccctgcactcagacgggccattaggcgaaacagtcttggagtgt
tattcttgtggtgttcgtaatgtgtttctactaggatttataccagctaaagcagattct
gtagttgttttactatgtcgacaaccatgtgctgcacaaaattcattgaaagatttaaat
tgggaacaagatcaatggaaacctcttatatctgatcgttgttttttgtcatggctagtt
aaaacaccaagcgagcaagaacagttacgagcacgtcaaatatcagcagcacaaattaat
aagctagaagaattatggaaagaaaatattgatgccacctttcaagatttagagaagcct
ggaattgacactgaaccagcacaagtgttaatgcgttacgaagatggttatcagtacgaa
aaaattttaggaccgctcgtacgtctcgaagctgactacgataagaaacttaaagaatcc
caaactcaggaaaatattgaagttcgttgggatattggtctaaataaaaaaaatattgct
tactttacgttggcaaaaactgactctgatatgaaattaatgcatggtgatgagttgcgt
ttaagatatgttggagagatgcataaagcatggagcgaagttgggcatgttattaaagtg
cctgataattatggcgatgatattggtttagaattgaaagcatcacccgatgctccagtt
aaatgcacttcgaattttgccgtcgacttcatttggaaaagtacttcattcactcgtatg
actcgtgcattaaaattatttgcaatggatcgcaattctgtttctaactttatatactct
cgtttattgggtcatggtcgtcaagatggcaatgatgaagttctatttcggtcacaacca
cccaaactttacactgctcctaatctccccgacctaaaccgttcgcaagtgtatgcagtg
aaacatgctttacaacgtccacttagtttaattcaaggaccgcctggcacaggaaaaact
gttacttctgctactatagtgtatcagttggttaaacaacatggtggacccatattggtt
tgtgctcctagtaataccgcagtagatcagctaacagaaaagatacatttaactaatctg
aaagcagtacgtgtgtgtgctaaatcgagagaatctattgatagtccagtcagcttttta
gctttacataatcaaattcgttgcatggaaactaattctgagttgaaaaaattgcaacaa
ttaaaagatgaaactggtgagcttagttcagctgatgaaaagcgttatcgtagcttaaaa
cgtggagctgaaaatcaattacttgaagctgccgatgtaatttgttgcacttgcgtagga
gcaggtgatgcgcgcttagcacgaattaagttctcgtctatacttattgatgagtctatg
caatcaacagaaccggaatgtatggtgccagttgtattaggtgcaaaacaattaatacta
gtcggtgatcattgccaactaggaccagttgttatgtgtaaaaaagcggcacgtgctggt
ctatcacaaagtttgtttgaaagattggttgtgctgggtattagaccattccgtttagaa
gtacaatatcgtatgcatcctgagctttcacaatttccgtctaacttcttttatgagggt
tccttgcaaaatggtgtatgtgcagaagatcggaaacttaaaattgattttccttggcct
caaccggatagaccaatgtttttcctagttactcaaggtcaggaagaaattgctggttcc
ggaacttcttacttaaatcgcactgaagctgcaaatgttgaaaaaattacaacacgattc
cttaaagcaggtgttagaccagagcaaattggtattataacaccatatgaaggtcagaga
gcttacctagtacaatatatgcaataccaaggtagtttacattcaaaactctatcaagaa
attgaaatagccagtgtagacgcttttcaaggtagagaaaaagatttgattataatgtcg
tgcgtacgttccaatgaaagacaaggtattggtttcttaaatgatcctcgtcgtttgaat
gttgctttaactcgttccaagtatggcacaattattgttggaaacccgaaagttttatca
aaacaagcattgtggaatcatttgttaaatttctacaaggatcgcaaagtacttgttgaa
ggttccttgaacaatttgaaggagtctttaatacaatttcaaaaaccgaagaaaattgtt
aatacacttaatatgggtgcacactttatgaatacaataatggcaaatgcaaaagaagtt
attgtacctggatctgtatacgacagaactagcaattatggtattagtagtggtccaagt
aatttacctggcaatagttttggtttgggtttcaatactggtatgggtggtggaaacttt
aactcaaatcagggtatgttgatgtcacaaaattatatgacaggacctagctattcaggc
ggacgtgttcctgttggcaacgccacacaaaatgctgtatccaattatcaacagtggggc
aatcaacatgattctattagttatgtttccccagaacgtgtgcgtgcaactttgaataat
atgcccgtacctgttggtatgtttatgaatatgggaaatatgcctcgtcgcttttataat
caacaagcggtgcaagctgctgtaaaacaaggacgaaacggtggtggtaatgggcagact
aaaactaatggttctaacggttctactaggaaccagcagggtggcaaaggacgtcccatt
ttggccaatagttttacaagcgttatatcacaagctagtgcgtcaccacttactcaaaat
atgtcccagcacggtggattcgccctatcgcaacaaccggatctttctcaagattttgga
caaatttcccaaatagatgttttatctcaagatatatcaggagctcagctacagagtgat
cgtctaagtttgggctttaacagccaaagccaattgactcaaccgccttattga
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