Teleopsis dalmanni (Malaysian stalk-eyed fly): 119678401
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Entry
119678401 CDS
T09311
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03008
Ribosome biogenesis in eukaryotes
tda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119678401
09123 Folding, sorting and degradation
03018 RNA degradation
119678401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tda03021
]
119678401
03019 Messenger RNA biogenesis [BR:
tda03019
]
119678401
03009 Ribosome biogenesis [BR:
tda03009
]
119678401
03016 Transfer RNA biogenesis [BR:
tda03016
]
119678401
Transcription machinery [BR:
tda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119678401
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119678401
Ribosome biogenesis [BR:
tda03009
]
Eukaryotic type
Pre-60S particles
RNases
119678401
Transfer RNA biogenesis [BR:
tda03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119678401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
119678401
NCBI-ProteinID:
XP_037946138
LinkDB
All DBs
Position
2:complement(158436009..158444422)
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AA seq
783 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIIECTENKSIDTETGKNTYEDATLPNPNGVEFDNLYLDMNGII
HPCTHPEDKPPPKNEDEMMTAIFDCIDRIFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RSAKEAVEKRAELCKLRNELISKGYVLPPEKEKGEHFDSNCITPGTPFMDRLSQCLHYYI
HDRMNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIM
LGLATHEPNFTIIREEFLPNKPRPCDLCLQYGHDMDKCVGLNSADISNIKNFQPDVPVGA
EVKFIFVRLSVLREYLMKTLLMPNLPFKYVFERALDDWVFMCFFVGNDFLPHLPSLEIRE
GAVDRLVELYKKCVYKTGGYITNAGQVDLSRVQLILTDLGNLEDQIFKDRQRREQQFKAR
EKMKSRREDEFQNRNFEKSVFGPSPVGPGSSKPQLITNYKSEAASLRNSETQGQIRKRSA
VDAQLDDDEDDVNDEVRLWEFGFKDRYYESKFDVAPENHSFRYSVALQYVRGLCWVLKYY
YQGCASWKWYFPYHYAPFASDFVNIVGLSTNFERGTKPFNPLEQLMGVFPAASSSHVPKP
WADLMSNPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDERRLFKALTPFYDKLTKEE
IHRNTQGECRLYIGRLQKQFEVFRQLSKMKTTNAKKDSKSIVIDGVRGLVFPATENIDLQ
GCLRSPIIGLHDISENQVITVCFKDPEYEEGFIFSADRLPNAIEPPTVLAPESRPHNYNP
VIG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccggcatttttccgttggttaagcagaaaatatccaagtgttataattgaa
tgcactgaaaataagtctatcgatacagaaactggaaagaacacttatgaagatgctaca
ttaccgaatccaaatggtgttgagtttgacaacttatatctggatatgaatggtataatt
catccatgcactcatccagaagataaacctccgcccaaaaatgaagatgaaatgatgaca
gcaatattcgattgcattgatagaatttttggtattgtaagacctcgaaagcttttatat
atggctattgacggagttgcaccacgtgcaaaaatgaaccaacaaagatcaagacgtttt
agatcggcaaaggaagctgttgaaaaacgtgcagaattatgtaaactccggaatgaactg
atatcaaaaggttatgtcctcccaccggaaaaagaaaaaggagagcatttcgattctaat
tgtataacacctggcacaccattcatggatagattaagtcaatgtttacattattatata
catgatcgtatgaataataatcccgcatggaaagggataaaagttattctttctgatgct
aatgtacctggagaaggagaacataagataatggattatatcagaaagcagcgagctcaa
ccagatcatgatcccaacactcaacatgtactttgtggtgctgatgcagatcttataatg
cttggtcttgcaacacatgaacctaattttactataattagggaagagtttttgccaaac
aaaccgcgcccctgtgatctttgtttgcaatatggtcatgatatggacaaatgtgtaggt
ttaaattctgcagatatttcaaacatcaaaaattttcagcctgatgttcctgttggagca
gaagttaaatttatctttgttcgattaagtgtattacgtgaatatttaatgaaaactctt
ttaatgcctaatctgcctttcaaatatgtatttgaacgagctcttgatgattgggttttt
atgtgtttctttgttggaaacgactttttaccacatttacccagtcttgaaattagggag
ggagcggttgatcgcttagttgaactttataaaaaatgcgtttataagactggaggttac
ataactaatgcaggtcaagtagatttatcaagagtacaattaattttaactgatctagga
aacttggaagatcaaatatttaaggataggcaacggagagaacaacaatttaaagctaga
gagaagatgaaatctaggcgtgaagacgaatttcaaaataggaattttgaaaaatctgtc
tttggtccttctccagtgggtccaggaagttcaaagccacagcttataacaaactataaa
agcgaagctgcttctttaagaaatagtgaaacacaaggacaaattcgaaaacggtctgct
gtagatgctcagcttgatgatgatgaagatgatgtcaatgatgaagttcgattatgggaa
tttggttttaaggatagatattacgaatcaaaatttgacgttgcacctgaaaatcatagt
tttaggtattcggttgctttgcaatatgttcgtggtttgtgttgggtacttaaatattat
tatcaggggtgtgcatcctggaaatggtattttccttatcactatgcaccatttgcatcg
gactttgtaaatattgttggactatcgactaatttcgaaagaggtaccaagccttttaat
cctttggagcagttaatgggagtatttccagccgcaagtagttctcatgttccaaaacca
tgggcagatcttatgtcaaatccagagtcaccaataatcgacttttatcccgaggacttc
aaaatagatcttaatggaaagaaatttgcttggcaaggtgttgctttattaccattcgtc
gatgaacgtcgattgtttaaagcattaacaccattttacgataaactaacaaaagaagaa
attcaccgtaatacgcaaggtgaatgtcgtttgtacatcggaagattacagaaacagttt
gaagtatttagacaactatctaagatgaaaacaacaaatgcaaaaaaagatagtaaatca
atagtaatagatggagtacgtggattagtttttccagcaacagaaaatattgatttacaa
ggatgtttaagatccccaattattggtcttcacgatataagtgaaaaccaagttattact
gtttgttttaaagatccagaatatgaagaaggattcattttttcagccgatcgtcttcca
aatgcaattgaacctcctacagttctggctcctgaatcaagaccacacaactacaatcca
gtaattggatag
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