Teleopsis dalmanni (Malaysian stalk-eyed fly): 119680042
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Entry
119680042 CDS
T09311
Name
(RefSeq) exosome component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119680042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119680042
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
119680042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
DUF6178
Motif
Other DBs
NCBI-GeneID:
119680042
NCBI-ProteinID:
XP_037948594
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All DBs
Position
2:complement(191779955..191784010)
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AA seq
900 aa
AA seq
DB search
MDNQNETITEEPAAKKAKLQEKASSSGLENLLKTGFQQVVKAVKLSNGIPSEEERSYYST
YKSFNDNVSAQSDMVLNLMSHILKYESVGLSLQKRTDDEKFDLLQQCNDAALERVNSNLD
IYAGAVQKDIHPIIIESEVKKIDITTKNAGSWNLKQAKETTDKETIAARLITAKNIARPQ
IKFNIPIDNSNNTPFIPKLTYKPNSLKPLAILPEYDEAGDVVSYLHPYEFELEKFEMPEE
ELQQKSPVKPAKVDVVELMHVDTVELLNKALEELRQHKMIAVDVEHHAYRSFLGFTCLVQ
MSTKDKDYIFDALKLRDDMHILNEVLTNPKIVKIFHGADLDIIWLQRDLSLYVVNMFDTH
HAAKLLNFSRLSLAYLLKHYCDIEVDKTFQLADWRIRPLPDMLINYARQDTHYLIYVYES
ICNDLLDKSNQHGNLLRNVYQTSNELCKRRYCKPLFNNDSHLEFYRKSKHIFDNRQMSAL
SEIFAWRDAIARKEDESYNYVLPNHMLLRISETLPREAQGILACCNPIPPLVRQNLYVLH
DIILKARAKPLIKPTLVGDAFSRVATKGSKDYDNILYCPHDLTVVEDFRDDLPTMLKIDK
NNVDVNEIDEIAEKITYLQLPTVDVFEKMNAIYDDPLKKAIKEGCNKSKFKTPYERYLAI
LPQIEKEKLEEAERIAHENRSRQLCPSAPKVVVKEEINTENDDTLNVSIKEYLKRKRVES
DGPSTSSKVAKMQSTSTLDQKDKPSSSKASLKKKNSTSHKTDKPPIISKDESRLNESIVT
IEDESDTDVIVSTDVDTNKSNTNDNKNNFSSKVKNKFNNFKKKFKNKRKNKAQKSGQSSN
VPVQNNFDYNNVDFKKFQGGSQRANGIQMKQTIHGKSNSNKAKNKKFNKLFTFSNVKSKK
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggataatcagaatgagacgatcacagaagaacccgctgctaaaaaagctaagcttcaa
gaaaaagcgtcaagtagcggtttggaaaatcttttgaagactggatttcaacaggtggtt
aaggcggtaaaactttcgaatggtataccatcagaagaggagcgcagttactattcaacc
tacaaatcatttaatgacaatgtaagcgcccaatctgatatggtactgaatcttatgtcg
catattttaaaatatgaaagtgttggtctttcactacaaaagcgtactgatgatgaaaaa
tttgaccttttgcaacaatgcaatgacgccgcactagaacgtgtaaattctaatttagat
atatacgcaggggcagtacagaaagatattcatccaataattatagaatcagaagtgaaa
aaaattgatattacaacaaaaaatgctggaagctggaatttaaaacaagcgaaagaaact
acagacaaagaaacaatagcggcacgtttaataacagcaaaaaacattgcacgaccacaa
attaaattcaatataccaattgataatagcaataatacgccatttataccaaaattgaca
tataagccgaattcattaaaaccattggctatactaccggaatatgatgaggcaggcgat
gttgtgagttacttgcatccttatgaatttgaattggaaaaatttgagatgccagaagag
gaattgcagcaaaaatcgcctgtgaaaccagcaaaagttgatgttgttgagcttatgcat
gtcgatactgttgagttgctcaacaaggcgcttgaggaactacgtcaacataaaatgatt
gctgttgatgttgaacatcatgcatatcgtagtttcttgggattcacttgcctagtacaa
atgtcaaccaaagataaggactatatattcgatgcgctaaaattaagagatgatatgcat
attttaaatgaagttttaactaatcccaaaatagttaaaatatttcatggtgctgatttg
gatattatttggttacagcgtgatttaagtttatacgttgtgaacatgtttgacacacat
catgctgcgaagttgcttaatttctcacgtctctccttggcatatctgcttaaacactac
tgtgacattgaagttgataaaacatttcagttggctgattggcgcatacgcccattaccc
gatatgcttattaactacgcccgtcaggacacgcactacctaatctatgtgtacgaaagt
atttgcaatgatttgttggataagtccaatcagcacggcaatttattgcgaaatgtgtat
caaactagcaatgagttatgcaagcgacgttactgcaaaccactatttaataacgattca
catttagaattttatcgaaagtcaaaacatatttttgataatagacaaatgagtgcttta
agtgaaatatttgcttggcgcgatgcgattgcacgcaaagaagatgaaagttataattat
gttttaccgaatcatatgttattgcgtatatccgagacgttaccacgcgaagcacaaggc
attttggcttgctgtaatcctataccaccacttgtacgacaaaatttatatgtacttcac
gatataatattaaaagcgcgcgcaaaaccgcttattaagccaacgcttgtaggtgatgct
tttagtcgtgtggcaacaaaaggcagtaaagattatgacaatatattatattgtccacat
gatttgactgtggttgaagattttcgtgatgatcttcctactatgctaaaaatcgataaa
aataatgtcgatgttaatgaaattgatgagatcgcagaaaaaataacatacttacaactt
ccaacagtggatgtgttcgaaaaaatgaatgctatttatgatgatccattgaaaaaggcc
attaaagaaggatgtaataaatcaaagttcaagacaccttatgagcgttatttggcgata
ttaccacaaattgagaaggagaaacttgaagaagcagagagaattgctcatgaaaacagg
agccggcaattatgtccatctgcaccaaaagtagtggttaaagaagagattaacacagag
aacgacgatacactgaatgtatcaattaaagaatatttaaaacgcaaacgtgtagaatca
gatggtccaagcacttcaagtaaagtagcaaaaatgcaaagcacatcaacacttgatcag
aaagacaaacccagttcttctaaagccagtttaaaaaaaaaaaattctacaagtcataaa
actgataagccacctataataagtaaagatgaaagtcgtctaaatgaatcaattgtaacg
atagaggatgaaagcgatactgatgttattgtttcgactgatgtagatacaaataaatca
aacacaaatgacaacaaaaataatttctcatcaaaagttaaaaataaatttaacaatttt
aagaagaaatttaaaaacaaaaggaaaaataaagctcaaaagagtggacaatcctcaaac
gttccggtacaaaacaattttgattataataatgtggactttaaaaaatttcaaggtggt
tctcaacgtgctaatggcatacaaatgaaacaaacaattcacggcaaaagtaattcaaat
aaagctaaaaataaaaagttcaacaaactttttacatttagtaatgtaaaaagtaaaaag
taa
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