Teleopsis dalmanni (Malaysian stalk-eyed fly): 119680402
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Entry
119680402 CDS
T09311
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119680402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119680402
03041 Spliceosome [BR:
tda03041
]
119680402
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119680402
Spliceosome [BR:
tda03041
]
Complex B
Other components
Prp19-related factors
119680402
Complex C
119680402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
Mad3_BUB1_I
TPR_15
TPR_10
TPR_7
ARM_TT21
ARM_TT21_C
Hydro_N_hd
PPR
DUF908
Myc_N
Motif
Other DBs
NCBI-GeneID:
119680402
NCBI-ProteinID:
XP_037949130
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All DBs
Position
2:6041616..6044768
Genome browser
AA seq
877 aa
AA seq
DB search
MPTIKTKLNIDIDFPEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNIVYERALKE
LPGSYKIWYNYLRTRRKQVRGRPLNDPMYEEVNNTFERALVFMHKMPRIWMDYGTFMTLQ
CRITRTRYVFDRALRALPITQHHRIWPLYLKFVRQFDIPETAVRVYRRYLKLCPDEAEEY
IEYLSEVGKLDDAAQQLATIVDNENFASKFGKSNHQLWNELCELISKNPHKVHSLNVDAI
IRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVKTVRDFTQVFDEYAQFE
EVSLSKRMETVANDPTSTEEDDIDVELRLARFEYLMERRLLLLNSVLLRQNPHNVHEWHK
RVKLYEDKPLEIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYEGNDQIDDARVIFEKGT
EVEYIKVDELASVWCEWAEMEIRQENFENALKLMQKATAMPKRKVAYHDDTETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDRIIDLKICTPQIIINFGLFLEEHNYFEEAFRAYE
KGIALFKWPNVFDIWNSYLTKFLKRYGGTKLERARDLFEQCLENCPPEHAKYFYLLYAKL
EEEHGLARHAMAVYDRATAAVKPEEMYDMYNIFIKKAAEIYGLPRTREIYEKAIESLPEE
NMRYICVRFAEMETKLGEIDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMRE
MLRIKRSVQATYNTQVNMMAAQFINSGSTAENEVAQADAMRKLEAAAAAQKDKLPIKSQA
ASNIMFVRGETQGGAAKDKVVNPDEINIDDSDEDEDEGEEEDEEADENETDNIAGEKATN
VDVNGMAMKKLRIQQKSIPTKVFGGLKTTVEDEDEEE
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgccaactataaaaacgaaacttaatattgatatagatttcccagaagaggatgtgccg
tatgaggaagagatactgcgtaatgcttattccgtaaaacattggttgcgttatattgac
cacaaagctaaggcacccaacaatggtgttaatatagtgtatgaacgtgcattgaaggaa
ttgcctggcagttacaaaatttggtacaattacttgcgcactaggaggaaacaggtacgt
ggacgtccattgaacgaccctatgtatgaagaagtcaataatacgtttgaacgtgcgttg
gtttttatgcataaaatgccacgcatttggatggattatggtacttttatgactttgcaa
tgtcgaataacacgtaccagatacgtttttgatcgcgccttacgtgcgctacccataacg
cagcatcatcgtatctggccactgtatctgaagtttgtacgtcagtttgacatacccgaa
actgcggtgcgagtttataggcgatacttaaaattatgcccagatgaagctgaggaatat
attgaatatttatctgaagtgggcaaattagatgatgcggctcagcagttagctacgatt
gtagataatgaaaattttgcttcaaaatttggtaaatcaaatcatcaactttggaatgag
ttgtgtgagcttatatctaagaatccgcataaagtgcattcactgaatgtggatgctatt
attagaggtggcttgagaaggtatacggatcaattgggtcatttatggaactctttggcg
gattactacgtacgttccggtttgttcgatcgcgcccgtgatatatatgaagaagccata
caaacagttaagacagtacgagatttcactcaagtattcgatgaatacgcacagttcgag
gaagtttcattaagcaaacgtatggaaactgttgcgaatgatccaacctctactgaggag
gatgatattgatgtagaactgcgcttggcacgctttgaatatctaatggaacgccgtttg
ttgttactgaatagcgtgttgctgcgccagaatccacacaacgttcacgaatggcacaag
cgtgttaagttgtacgaagacaagccgttggaaatcatcaacacttacacagaagctgtg
cagactgtccaaccaaaattggccgttggtaaactgcatacattgtgggtcgaattcgcc
aagttctacgagggcaatgatcaaattgacgatgcgcgcgtcatttttgaaaaaggcacc
gaagttgaatacatcaaagtggatgaattggcgtctgtctggtgtgaatgggcagaaatg
gaaataagacaagaaaattttgaaaacgcactgaagttaatgcaaaaggcaacggcgatg
ccaaaacgtaaggtggcatatcacgatgacacagagacggtacaaatgcgtctttacaaa
tcgctaaaagtttggtcgatgtatgcagatttggaagaatcatttgggactttcaaaacc
tgcaaagccgtgtacgatcggataatcgatttaaaaatttgtactccacaaatcattata
aatttcggactctttcttgaggagcacaattactttgaggaagcatttcgcgcttatgaa
aaaggcattgctctattcaagtggccaaatgtctttgatatttggaactcttatttgaca
aaatttttaaaacgttatggcggcactaaactggaacgcgcacgtgatcttttcgagcag
tgtttggaaaactgtccaccggagcatgcaaaatatttctatttactttatgcgaagttg
gaggaggaacatggcttggctcgacatgctatggcggtgtatgatcgtgccaccgctgca
gttaagcctgaggaaatgtatgatatgtacaacatattcattaagaaagcagcagagatt
tatggtctacctagaacgcgcgagatatacgagaaagctattgaatctttgcccgaagaa
aatatgcggtatatttgcgtgcgttttgctgaaatggagactaaattgggagaaatcgat
cgtgcacgcgcaatctacgcgcactgttcacaggtttgtgatccacgcataactgctgat
ttctggcaaacatggaaagagtttgaagtgcggcatggcaatgaagacacaatgcgcgaa
atgttgcgtattaaacgttccgttcaagccacgtataacacgcaagttaatatgatggcg
gcacaatttattaacagcggcagcactgcggagaatgaagttgctcaagcggacgcaatg
cgaaaactggaggctgcagcagccgcacagaaagacaaactaccaatcaaatcgcaggct
gcgtccaatattatgttcgtgcgtggtgaaacacagggtggcgcagctaaagataaggtt
gttaatcctgatgaaataaatattgatgacagtgatgaagatgaggatgaaggagaagag
gaagacgaagaagccgatgagaatgaaacggataatattgctggcgaaaaagccacaaat
gttgatgtgaacggcatggcaatgaaaaaattgcgtatccagcaaaaatccataccaact
aaggtatttggcggacttaaaacaaccgttgaggatgaagatgaagaagaatag
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