Teleopsis dalmanni (Malaysian stalk-eyed fly): 119687274
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Entry
119687274 CDS
T09311
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tda
Teleopsis dalmanni (Malaysian stalk-eyed fly)
Pathway
tda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119687274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tda03019
]
119687274
03041 Spliceosome [BR:
tda03041
]
119687274
03009 Ribosome biogenesis [BR:
tda03009
]
119687274
03016 Transfer RNA biogenesis [BR:
tda03016
]
119687274
Enzymes [BR:
tda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119687274
Messenger RNA biogenesis [BR:
tda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119687274
Spliceosome [BR:
tda03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119687274
Complex C
U4/U6.U5 tri-SnRNP related factors
119687274
Ribosome biogenesis [BR:
tda03009
]
Eukaryotic type
Pre-60S particles
Helicases
119687274
Transfer RNA biogenesis [BR:
tda03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119687274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
119687274
NCBI-ProteinID:
XP_037957459
LinkDB
All DBs
Position
X:52961315..52970798
Genome browser
AA seq
1189 aa
AA seq
DB search
MDGIDDLFGAFDEQEEEQPSVLKRVREQIRSAKHQSQEPVDNDVPSAKIPRSAVEMRKSL
DKSDASNEAGPKVQHTNDKRHKSKKNHSTYSPKRSTKEKQESREVKTTKQQVDKQRPSEK
SIDGLSPQNDKIKKKRDRTREKRAGSTKLTDISRNRNYNYKNENESVTSNVKEHKDKKAV
READNTVKAARGFIETATKSSLECKSSDKIKNDKNIGNNDLSESKQDFEETEIMLAGLPK
DIFLNNINIRVLKAPDSCTHEVAVLTDQPYIELEESTTTPAKEYSFVLDAFQQRAILCIE
NGQSVLVSAHTSAGKTVVAEYAIAKSLLMKQRVIYTTPIKALSNQKFREFTLEFGDVGII
TGDVTINPSASCLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEESLIL
LPDNVHFVFLSATIPNARQFAEWVTHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIYQIV
DEKGVFREENFNTAMAVMQKGKGPKSNKLGRKGGMRGVNGEQSNIFKILKMVMENKFAPV
IIFSFSKRECEAYAMQLAKLDFNIAAEKKLIMEVFNNATSVLNESDRNLPQINNILPLLL
RGIGIHHGGLLPLLKEIVEILFGEGLLKALFATETFAMGLNMPARTVVFSAPRKFDGQNF
RWISSGEYIQMAGRAGRRGIDDKGIVILMIDEEVSPATGRSIVKGEADAIISEFHLSYNM
VLNLLRVEEVNPEYMLERSFRQFQNQTNIPNLFNKYKDKQKELAKMKIPNEGNVITYHNI
RTKLENLKTKYISWLTKPQYLKPFMHRGRLLQIKNAKYEYDWGVVVNLIEEKKRNPTDTS
DEKLHFQILLHVTEGTEKDEFPKPFQQGEKGNMEVVNVSSDDILSISSLRVYVPDELRQS
DHRLSVVMTMREIKKRFPKGIPKLNPKKDLKIKSSEFDEIVELIEVYEDRLYKHSLHTTE
TDADVYPLYLKKQHIQDELQALRDKIKDARSLLQMDELNYRKRVLRRLEYATSSDVIEFK
GRVACELSAADELLLTELMFNGVFNDLTSFQIAAMLSCFVCDEKSSETPKLTMELAEPLR
IMQDLARRIAKISRECKLPLDEDEYLEKFKPTLMDVIYNWCKGAAFASICKQTDVFEGSI
IRCMRRLEELLRQMNQAAKTIGNTELENKFSDGVKLLKRDIVFAASLYL
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatggtatagacgatttatttggtgcatttgatgaacaagaagaagaacaaccatca
gtgcttaagagagttagagagcagatacgaagtgcaaagcatcaatcgcaagaaccggtg
gataacgatgtgccttcagcaaaaataccgcgttctgcagtagaaatgaggaaatccttg
gacaaatctgatgcatcaaacgaagccggtcctaaagttcaacacactaatgataaaaga
cacaaatcaaaaaaaaaccattccacttattctccaaaaaggtccaccaaagagaaacaa
gaatccagggaggttaagacaactaaacaacaagtggataagcaaagaccttccgaaaag
tccattgatggactgagcccacaaaatgataaaattaaaaagaaacgtgacagaacacgt
gaaaagagagcaggtagcacaaagcttacggatatatcaagaaacagaaattataattat
aaaaatgaaaatgaaagtgtcacttccaatgtgaaagaacataaggataaaaaagcggtg
agagaagcggataatactgttaaagcagctagaggatttatcgaaactgctacaaaaagt
tctctagagtgcaagtctagcgataaaataaaaaacgataaaaatattggaaataacgac
ttgagcgaaagtaaacaggattttgaagaaacagaaattatgcttgcgggtttaccgaaa
gatatttttctaaacaatataaatataagagtattaaaagcaccagactcctgtacacat
gaagttgcagttctgacagatcaaccttatattgaattggaggaaagcacaacaacgcca
gctaaagaatatagtttcgttttggacgcctttcaacagcgcgcaatactgtgtattgaa
aatggacaaagtgttttggtttcggcgcacacctcagctggcaaaacagtggtcgctgaa
tatgcaattgccaagtcattgctaatgaaacaacgtgtcatatacacgacacctattaaa
gcactttctaatcagaaattccgtgaatttactttggaatttggtgacgtaggtataata
acaggtgatgttactatcaatccgagtgcatcatgcctaattatgacaacggaaattcta
cgaaatatgctttatcgaggaagtgaagttatgcgagaagtcggttgggtcatatttgat
gagattcattatatgagagataaagagcgtggtgtggtttgggaagaatctttgatttta
ttaccggataatgtacattttgtatttttatctgctacaatacctaatgcccgtcaattt
gccgaatgggttacgcatttacataaacaaccatgccatgttgtttatacagactaccgt
ccaacacctctgcaacactacatattcccggctggtggtgatgggatatatcaaattgtg
gatgaaaagggtgtatttcgagaggagaatttcaatactgctatggcggtgatgcaaaaa
ggtaaaggaccaaaatctaataaactgggtagaaaaggtggcatgagaggagttaatggt
gaacaatcaaatattttcaaaatattaaaaatggtcatggaaaacaaatttgcgcctgta
atcatattctcctttagtaagcgtgagtgcgaagcttatgcaatgcaattagccaaactc
gattttaatattgcggcggaaaaaaaacttatcatggaagtgtttaataatgcaactagc
gttttgaacgaaagtgaccgaaatttgccacaaataaataatatcttaccattattatta
cgaggaatcggcatacaccatggaggtcttctaccacttctgaaagaaattgttgagatt
ctatttggtgagggtctactcaaagccctgttcgctactgagacttttgctatggggtta
aatatgccagcgcgtactgtagtgttttccgcacctcggaaatttgatggacaaaatttc
aggtggatctcatctggtgaatatatacagatggcaggtcgcgctggtcgccgtggtatt
gatgataaaggaattgttatattaatgattgatgaagaagtttcgccagctactggacga
agtatagtaaaaggtgaagctgatgctataatatcagagtttcacttgtcttacaatatg
gttttgaatttattacgtgtagaggaagtcaatcctgagtacatgttagaaagatcattt
cgtcaatttcagaatcaaacaaatataccaaatttatttaacaaatataaagataaacag
aaagaacttgctaaaatgaaaataccgaatgaaggcaatgttataacgtatcataatatt
cggacaaaactggagaacttaaaaacgaaatatataagttggttaacaaaacctcaatat
ttaaagcccttcatgcatcgtggtcgtttgttacaaatcaaaaacgcgaaatatgagtat
gattggggagtagtagttaatttaatagaagagaaaaagcggaatccaaccgatacatct
gatgaaaagcttcactttcaaatacttttacatgtgacagaaggtaccgaaaaggatgaa
ttcccaaaaccatttcaacaaggtgaaaagggtaatatggaagtagtaaatgtttctagt
gatgatattctgtctatatcgtcattacgtgtatatgtaccggatgaattacgccaatca
gatcaccgtttgtcggtagttatgacaatgcgtgaaattaagaaacgtttcccaaaggga
atacctaaacttaatccaaaaaaagatttgaaaataaaatcgagcgagttcgatgagatc
gtcgaattgatagaagtatatgaagatcggctctataaacattctttacatacaactgaa
acggatgctgatgtttatccattatatttaaagaaacaacatatacaggatgaattacaa
gcattaagggacaaaattaaggatgcacgtagtctattacaaatggacgaacttaattat
cgaaaacgtgttcttcgtcggttagaatatgcgacatcatccgatgtcattgaattcaaa
ggacgcgttgcttgtgagctaagcgctgcagatgagcttttactaacagaattgatgttt
aatggcgttttcaatgatttaacaagttttcaaatcgcagcgatgctatcgtgttttgtt
tgcgatgaaaaatcatcagaaacacctaagctgactatggaattagcagaacctttacgc
attatgcaagatttagcacgtcgaattgcgaaaatatcaagggaatgtaaattaccactt
gacgaagatgaatatttggagaaatttaagccaacgctaatggatgttatatataattgg
tgtaaaggcgccgcatttgcgtcaatatgtaaacagacagacgtttttgaaggttccatt
atacgttgcatgcgccgcttagaggagctgttaaggcaaatgaatcaagctgctaaaact
attggcaatacagaattagaaaacaaattttcagatggtgtcaaacttttgaaacgagac
atagtctttgcagcatctctatacttatga
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