Triticum dicoccoides (wild emmer wheat): 119267018
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Entry
119267018 CDS
T07278
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119267018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119267018
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119267018
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
119267018
NCBI-ProteinID:
XP_037404210
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All DBs
Position
1A:complement(218742480..218755017)
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AA seq
959 aa
AA seq
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MDSEDCLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRFFDRRDYYTAHGENATFIA
KTYYHTMTALRQLGGNSDGISSVSVSRAMFETIARNLLLDRTDHTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQYSPVTVALFPVFREGQLYVALSFVDMTNRKLGLAEFPED
SRFTNVESALVALGCKECLLPADFEKSIDLQPLQDAISNCSILLTERKKAEFKSRDLVQD
LGRIIRGSVEPVRDLLSQFDYALGTLGALVSYAELLADDTNYGNYTIEKFNLDRYMRLDS
AVVRALNIVEGKTDVNKNFSLFGLMNRTCTAGMGKRLLNKWLKQPLIDVNEINNRLDMVQ
AFAEDPELRQGLRQQLKRISDIDRLTHALRKKSANLQPVVKLYQSCSRIPYIKGVLQQYN
GQFSTSVMTRFLSSLEEWLTENRYGRFANLVETAIDLGQVDNGEYRISPLYSSDLAVLKD
ELSEVENHINNLHMHTATDLDLSVDKQLKLEKGPFGHVFRISKKDEQKVRKKLTTNYIII
ETRKDGVKFTSAKLKKLGDQYQSLLGDYTSCQKKIVDNVVQVSCTFSEVFENFAAIISEL
DVLQSFADLAISCPVPYVRPDITTSEEGDIILQGSRHPCVEAQDGVNFIPNDCTLARGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGSFVPCDQASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALANKNGDQHQHVPDLGIANYHVGAHIDPSSRKLTMLYKVFIMIMSLFSSGSCV
QKVEPGSCDQSFGIHVAEFANFPEAVIALAKSKAEELEDFTSAPNLSGEPSDEVGSKRKR
VFSPDDVTRGAARARLLLEDFSALPLDEVDGSKATEMVAKLKSDFEKDAASNPWLQQFL
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgaagactgcttgccggaggggggaaagctcccggagctcaagctagatgcg
aggcaagcccagggtttcatctccttcttcaagaagttgccgaaggatcctcgggccatt
cgtttctttgatcgccgggattattacactgctcatggtgagaatgcaacctttattgcg
aagacatactatcacacaatgactgccttaaggcagctgggcggtaactctgatggaatc
tcaagtgtcagtgttagcagggctatgtttgagaccattgcacgcaaccttttgttagat
aggacggaccatacactggagctctatgagggaagtgggtcaagttggaggttaacaaaa
tctggaacacctggaaacataggcagttttgaagatattctgtttgcaaacaatgacatg
caatattccccggttactgttgcattgtttcctgtcttccgtgaaggtcagctatatgta
gcgcttagttttgtggatatgacgaaccggaagcttgggttggctgagttccctgaagat
agtcgatttacaaatgtggaatcagcccttgttgcattaggttgcaaggagtgtcttctt
ccagcagattttgagaaatcaatagatttgcagcctcttcaggatgctattagcaattgc
agcattctactgactgaaagaaagaaggctgaatttaaatctagagatcttgtgcaggat
cttggtagaataatcaggggttctgtcgagccagttcgtgatctcctatctcagtttgac
tatgctttgggtacccttggagctctagtatcatatgctgagttgctagcagatgacact
aattatggaaattacacgattgagaaattcaatttggaccgctacatgcgacttgattct
gccgtggtgcgagcattgaatattgttgaaggaaaaactgatgtaaacaagaattttagt
ttgtttggtttgatgaacagaacctgcactgctgggatgggaaagcgactgcttaacaaa
tggctgaaacaacctttgatagatgtaaacgaaatcaataacagattagatatggttcag
gctttcgcagaagatccggagcttcgtcagggtcttaggcaacaacttaaaaggatatct
gatattgatcgcctaacacatgctctccgtaagaaatcagccaacctgcagcctgttgtt
aagctctaccagtcctgctctagaatcccatacatcaagggtgttcttcagcaatacaat
ggccaattttctacatctgtaatgacaaggttccttagctctttagaagagtggctgaca
gagaatcgatatggtaggtttgctaatcttgttgagacagccattgacctcggtcaagta
gacaatggcgagtacaggatatctcccctatattcttctgatttggctgtgctgaaggat
gagctttctgaagtcgaaaatcacataaacaatttgcacatgcatacagccactgatctg
gatctttctgttgataagcaattgaagctagaaaaaggcccatttggacatgtgttcaga
atctcaaagaaagatgaacagaaagtcaggaaaaagctcacgaccaattacattatcata
gaaactcgtaaagatggtgtgaagtttacaagcgccaagcttaaaaagctaggtgaccaa
taccagtcactgcttggtgattacacaagttgccagaaaaagattgttgataatgtagtg
caagtttcatgcaccttctcagaggtatttgagaattttgctgcaattatatccgagttg
gatgttttacagagttttgctgatttggcaataagttgcccagttccttatgtaagacca
gacatcacaacatcggaggaaggagatattattctacaaggtagtcggcatccttgtgtg
gaggcccaagatggtgttaacttcataccaaatgattgcactttggcgaggggaaaaagt
tggtttcaaatcatcactgggccaaacatgggtggaaaatccacttttatacgtcaggtt
ggcgtaaatgtcttgatggcacaagttggttcctttgttccttgtgatcaggcaagcatt
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccaactccgtggtgtt
tcaacctttatgcaagagatgcttgaaacagcatccattttgaaaggtgcatctgagaaa
tctctcataattatcgatgagttgggacgaggaacttccacatatgatggatttggtctt
gcatgggctatctgtgagcatcttgtggaagtgactagggcgcctacattgtttgcaact
cattttcatgaattaactgcattagcaaataaaaatggtgatcagcaccaacatgttcca
gatttgggaattgcaaattatcatgtgggtgcacatatagacccatcaagtcggaagttg
actatgctttataaggtcttcatcatgataatgtccctattttccagcggtagttgtgtc
caaaaggttgaacctggttcctgcgaccaaagttttggtatccatgttgcggaatttgct
aattttccagaagctgtcattgctcttgcaaaaagcaaagctgaagagttagaagacttt
accagtgcacctaacttgagtggtgaacccagtgacgaggttggatcgaaacgcaagagg
gtgtttagcccagatgatgtgacgaggggagctgctcgggctcgccttttgttggaggat
ttttctgcattgcctctagatgaggtggatgggagcaaggctacggagatggtggccaaa
ctgaaatcagacttcgagaaagatgcagccagtaatccctggctgcagcagttcctctga
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