Triticum dicoccoides (wild emmer wheat): 119269121
Help
Entry
119269121 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119269121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119269121
03012 Translation factors [BR:
tdc03012
]
119269121
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119269121
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119269121
Translation factors [BR:
tdc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119269121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HA2_C
R3H
OB_NTP_bind
HA2_N
Ank_2
Ank_5
AAA_19
AAA_22
nSTAND3
ATPase
AAA_16
ResIII
Ank
ABC_tran
AAA_23
Rad17
AAA_7
AAA_25
PhoH
Motif
Other DBs
NCBI-GeneID:
119269121
NCBI-ProteinID:
XP_037406778
LinkDB
All DBs
Position
3A:551341541..551353351
Genome browser
AA seq
1280 aa
AA seq
DB search
MARISVHPNLSPHHRPLLPQIAPPPARCPRRFPPGPPQQHTKGKATAAGSLHSGTRTGRR
AAPNAAAAAPPPPPPPLRDDGMGRKGPKGPKGAKANADALTKAALAAMSEETTVRITTVL
EDFRASDAQVHTFEPSLTNQERAAVHAMCKKMGMISKSKGYGERRCLSVYKTKNTQAPGK
EEGPSKLGFSEEARQILLDLFTHYPPDDAELNGDAVKNPGDKAAKIRWKTDTAFSRPAMQ
KHDIAKKVKMLTSKLSDPRQLRKISEDRSKLPIASFKDHISSTLENHQVVLISGETGCGK
TTQVPQYILDHVWGKGESCKIICTQPRRISAMSVAERISVERGETVGDTVGYKIRLESKG
GKNSSIIFCTNGVLLRVLIGRVTNSSNRQRAADDVIMGITHIIVDEIHERDRFSDFMLAI
LRDLLPMYPHLHLVLMSATIDAERFSQYFNGCPVIRVPGHTYPVKTFYLEDVLSILQSVG
DNHLNSETNDLGLDSVLTDDYKSSMDEAISMALASDEFDLLIELISIEQNPEIFNYQHSE
TGVTPLMVFARKGQLGDVCMLLSFGVDCSARDHDGKSALDWAQQENQVEAYEVIKKHMDC
SPAKLPEENELLKKYLATINPEHIDTVLIERLLRKICTDSNEGAILVFLPGWEDINQTRE
RLLASSFRDSSKFLVLSLHSMIPSSEQKKVFKRAPAGVRKIILSTNIAETAVTIDDIVFV
LDSGRMKEKSYDPYNNVSTLHTSWVSRANARQREGRAGRCQPGICYHLYSRFRAASLPEF
QIPEIKRMPIEELCLQVKLLDPNSKIADFLKKTLDPPVTETVKNAITVLQDLGALTQNEQ
LTDLGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFVLPMAPDERKRAAA
AKVELASLYGGYSDQLAVVAAFDCWTCAKEKGQEALFCSKYFVASNTMNMLSSMRKQLHS
ELAQRGFLPADTSACSLNAKVPGIISAVLVAGAYPMVGRLLPPRKNARRAVVETASGAKV
RLHPHSSNFNLSFNKSSGNPLMVFDEITRGDGGMYVKNCSVVGSYPLLLLATEIAVAPPD
DVSDEDDEGSSGDEAGKSTLGQQKEEIMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRE
RLASAILFKVKHPQDVLPPALGATMYAIACILSYDGLPGNLATKHGSGQSSADASGSAEG
RKGGFIPPGGFLMSLLSDIPPNAPHHQKSSNHPGGGSGHIRSSRAPAGRFNQSQQRPGRN
SSGPGSSASQSFKRQRDAAR
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcatatcggtccatccaaacctctccccgcaccaccgcccgctcctcccacag
atcgcaccgccaccagcacgttgccctagaaggtttccgcccggtccaccgcagcagcac
acaaagggcaaagcgaccgcagcgggaagcctccacagcgggacccgaaccggccgccgc
gccgccccgaacgccgccgccgccgcgccgcccccgcccccgccccctctccgcgacgac
gggatggggcgaaaggggcccaaggggcccaagggggccaaggcgaacgccgacgccctc
acgaaggccgccctggccgccatgagcgaggagacgaccgtacgcatcaccacggtgctc
gaggacttccgcgcctccgacgcccaagtgcacacattcgaacctagtcttaccaatcaa
gagcgggctgcagtacatgctatgtgtaaaaagatgggcatgatatcaaagagtaaaggg
tatggggaacggcgatgcctttctgtttacaaaactaaaaacacacaggcgcctggtaaa
gaagaaggccctagcaaactcggattttctgaagaagcaagacagattttgttagatctg
tttacacactatcctcctgatgatgctgaattgaatggtgatgctgtcaagaatcctggc
gataaggctgctaaaattcgatggaagacagatacagccttttccaggccagctatgcag
aaacatgatatagcaaagaaggtcaagatgcttacgtcgaaattaagtgatcctagacag
ttgaggaagatcagtgaagacagatccaaacttccgattgcatccttcaaagatcacatt
tcttctaccctagaaaatcaccaggtggttcttatttctggagaaacaggctgcggtaaa
actacccaggttccgcaatatatcttagatcatgtgtggggcaagggtgaatcatgtaag
atcatttgtactcaaccgcggcggatatcagctatgtcagttgccgaacgaatctctgtt
gaaagaggagagactgttggtgatacagttgggtacaagatacgtttggaatcgaaggga
gggaagaattcgtcaatcattttctgcacaaatggtgttctcttgagggtgttgataggc
agagtaactaacagttcaaataggcaacgcgcagctgatgatgtaattatggggataaca
cacattattgtggatgaaatccatgaaagggataggttttctgatttcatgctggctatc
ttgagagatctgctgccgatgtatcctcatcttcatttggtgctcatgagtgcaacgatt
gatgctgagcggttttcacaatatttcaatggatgcccggttattcgagtcccaggccat
acctatccggtcaaaactttctatttggaggatgtgctttctattctgcaatctgtaggt
gataatcatcttaattctgaaacaaatgatctgggacttgacagtgtgctaaccgatgat
tacaaaagctcaatggatgaagcaattagcatggctttagccagtgatgaatttgatctt
ctcattgagcttatttctatagagcagaacccagaaatcttcaactaccaacattcagag
actggtgtgacacctttgatggtttttgccaggaagggtcagcttggggatgtctgtatg
cttttatcatttggtgtggattgttctgcacgggatcatgatggaaaatctgcattagat
tgggcacagcaagagaatcaggtagaggcttatgaagttattaagaaacatatggattgt
agtcctgcaaaattacctgaagaaaacgagctgcttaagaaatacttggccactatcaac
ccagaacacattgatactgtgctgatagaacggttgcttagaaaaatatgtactgactcc
aatgaaggagctatcttagtcttccttcctggttgggaagatataaatcaaacacgggag
aggttacttgcttcttcctttcgggattcttcaaaatttcttgtactgtcacttcattcc
atgataccatcttcagagcagaaaaaggttttcaaacgtgcaccggcaggggttcgtaaa
attattctctcaaccaacatagcggagaccgcagtaacaattgatgatattgtatttgtt
ctagatagtgggaggatgaaagagaaaagctatgatccatacaataatgtgtctacactt
catacttcttgggtatctcgagctaatgcaagacagcgtgaaggacgtgccggtcgttgt
cagccaggaatttgctatcatctttactctagatttcgagcagcctcgttgccagaattc
caaattcctgaaattaagaggatgcctattgaagagctgtgtttgcaggtcaaactgctt
gatccaaactctaaaatagcagactttttaaagaagaccttggatcctccagttacagag
actgtaaaaaatgctattactgtgcttcaggatcttggtgctttaactcaaaatgaacaa
ttgacagatttgggtgaaaagttaggttctctcccggtccatccatccacaagcaagatg
ctcctgtttggtatattgatgaactgccttgatcctgcattgacattggcatgtgcagca
gactatagagatcctttcgtccttcctatggctccggatgagagaaaaagggctgctgca
gccaaggttgagcttgcttcattatatggtggatatagtgaccagcttgctgttgtagca
gcatttgattgttggacgtgtgccaaagagaaaggacaagaagctttgttttgttcaaag
tactttgtagcttcaaacaccatgaatatgttgtctagtatgaggaaacagcttcacagt
gaactagctcaaagaggatttcttcctgctgatacatctgcctgcagcttgaatgctaaa
gttccaggtatcattagtgctgtccttgtggctggcgcttacccaatggtaggacgattg
ctccctcctcgcaaaaatgctagaagggcagttgtggaaacagcaagtggtgccaaagtt
cgactacacccgcattcttccaactttaacttgtcatttaataaatcctctgggaatcca
ctaatggtatttgatgaaatcactcgaggtgatggtggaatgtatgtaaagaactgttca
gttgttggatcatatcctttacttctgcttgctacagaaatagctgttgctccacctgat
gatgtaagtgatgaggatgatgaaggttccagtggggatgaagcgggaaaaagcactctg
ggacaacaaaaggaagagatcatgtcttctcccgacaacactgtttcagttgttgttgat
cggtggctccgatttgatgctactgctctggatgttgctcagatatactgcctacgagaa
cgcctagcatctgctattcttttcaaagtgaaacatccacaggatgttctcccgcctgct
cttggagcaacgatgtatgcgattgcttgtatcctatcgtatgatggcttgcctggtaat
ttggcaacaaaacatggttcaggtcagagctcagcagatgctagcggatcagctgaggga
aggaaaggtggttttattccgcctggtggtttccttatgtcattgctatcggacatacca
cccaatgcacctcatcatcagaagtcatctaatcatccagggggtggttcagggcatatt
aggtcatcgagggcccccgctggtagatttaatcagtcgcagcagcgtcctggccgcaac
agctctggaccagggagttcagcatcacaatctttcaaaagacagcgggacgctgcacgg
tga
DBGET
integrated database retrieval system
