Triticum dicoccoides (wild emmer wheat): 119269128
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Entry
119269128 CDS
T07278
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119269128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119269128
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119269128
mRNA degradation factors
5'-3' decay
Decapping complex
119269128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119269128
NCBI-ProteinID:
XP_037406790
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Position
3A:551787290..551793362
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AA seq
808 aa
AA seq
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MPGAEADGAGGPGASSSSTADSFDAGQYAFFGKEPRDGLELGCLEADGGHGNGGGFSGPE
DGGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSLTV
DWTEDVEFPNYQDILENEEFQEGKRWWSSQSHSLVQQGDSKPLSRTSSYPQQPLQHRSSE
PITGPKSPPFTSFPPPGGRSPHPAQGLTRHGSIPSFGAGIQMGSPSMPLPGSPYHMVGLP
HGLPYGGSMPFGGPNMHVGNPMQNDWSNQANLFTGEHLNLLPNLLQKQISLPNSPMSSLL
FSQQQQRLAQLQPSHHQNYLNLPPHLFYHHHPPEIPGRFESATSLPSSRDKRSRSGRGKH
SLRFSQPPSDTTGSQNGESGGLKFRSKYMSSEEIESILRMQHSASHSSDPYVVDYYHQAC
MAKKGSSSKQKTNFSPTSVKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDN
PLSGEGPHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVDDIDRLLQSSQAQENSFQLRR
RRQVLLEGLAASLQLADPLGPSKSANSSGLAPKDDIVFLRIVSLPKGRKLLARYIRLIVP
GSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVALAKTVSTCAHHMELGALSACLAAVV
CSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQRAVSSYTPSNRALWQASFDAFFG
LLTKYCLTKYESILQMFVMQASGSVIGSEASQAPSREMPVELLRASLPHTNEQQRQMLLD
FAQRTTPASSFNPPGASGGHISSESVPG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgctgaggccgacggcgccggcggccccggcgcctcctcctcctccactgca
gatagttttgacgccgggcagtacgccttcttcgggaaggagccgcgcgacgggctcgag
ctaggttgcttggaggctgatggtggccatggcaatggcggtggattcagcgggccagag
gatggtggcttgtaccggctctcttcggttggagaagagattgacaatctaagtaacttg
tcggacgtcgatgatcttgcgagtacttttgctaagttgaaccgaaccgttagtggaaca
cggaatcctggtgttatcggtgacagacgatccatttcaagaggaagttctttaactgtt
gattggactgaggatgtagagtttcccaattatcaagatatattagaaaatgaggaattc
caggaaggtaaaagatggtggtcatcacagtcacattctttggtgcagcaaggggacagc
aaaccgctaagtcgaacatcttcctatcctcagcagccactgcagcaccgttccagtgaa
cctatcacaggaccaaagtctcctccgtttacctcgtttccgccaccaggtggtagatca
ccacatcctgctcaaggtcttacacgtcatgggagcattccatcatttggagctgggata
cagatgggttctccgagcatgccactgccaggttccccgtatcatatggttgggttacct
catggactaccatatgggggaagcatgccctttggtggtcctaatatgcatgtaggcaat
ccaatgcaaaatgactggtcaaaccaagccaacctgttcactggggagcaccttaatcta
ctgccaaacttattacagaaacaaatatcgcttccgaatagcccaatgtcatcactgcta
ttctctcagcaacagcagagattggcacagctccaaccatcccaccatcagaattaccta
aatttaccaccccacctattctaccatcatcaccccccagagataccaggcaggtttgaa
tctgctaccagtcttccttcatcaagagacaagagatcaagatcaggaaggggaaaacac
agtttacgtttttctcaaccaccatctgatactactggtagtcagaacggtgagagtggt
ggactgaagtttagatccaagtacatgtcatctgaagagatcgagtctattctaagaatg
cagcactcggcaagtcacagcagtgatccttatgttgttgattattatcatcaagcttgc
atggcgaaaaagggttccagttctaagcaaaagaccaatttctccccaacatcagttaaa
gacttgccctccaagtctagatcaagtggtgaccagcatgcatatcttcaggtcgatgct
cttgggagagtttctttctcttccattcgcaggccccggtctcttcttgaagttgacaat
cctttgtcaggtgagggtcctcatgatcagaagtcttccgtgaggtccctggagaaagaa
cctatgctagcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggat
gatattgacaggctcctgcagtctagccaggcacaggagaatagctttcagctgaggcga
aggcgacaagttctccttgaaggtctagccgcatcacttcagcttgctgaccctcttggg
cccagcaaatctgccaattcatctggtttagcccctaaggatgatattgtctttcttcgc
attgtttctcttcccaaaggacgtaagcttctggctcgttatatccggcttattgtccct
ggaagcgagttgaccaggattgtgtgcatggctattttccgacacctgaggttcttgttt
gggggtttaccatcagattcaagtgcagcagagacaacagttgctctggcaaagactgtt
tcgacttgtgctcaccatatggagcttggtgctcttagtgcttgccttgctgcagtcgtc
tgttcatctgaacaaccacctctccgtcctcttggtagctctgctggtgacggggcttct
cttattatcaagtcagtactggaccgagcaactgagttgctgactgatcagcgtgccgta
tccagctataccccgtcaaaccgagctctctggcaggcatcgtttgatgctttctttggg
cttctgacaaaatactgcctcactaagtatgaaagtattctgcagatgtttgtgatgcag
gcatcaggctctgtgattggatctgaagcctctcaagcacccagcagggagatgccagta
gagttgctacgtgcaagcctccctcacacaaacgagcagcaacggcagatgctgcttgat
ttcgctcagagaaccacgcctgccagcagttttaatccccctggtgctagcggtggacac
atctcttctgaatcggttcctggttaa
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