KEGG   Triticum dicoccoides (wild emmer wheat): 119270741
Entry
119270741         CDS       T07278                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03030  DNA replication
tdc03410  Base excision repair
tdc03420  Nucleotide excision repair
tdc03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119270741
   03410 Base excision repair
    119270741
   03420 Nucleotide excision repair
    119270741
   03430 Mismatch repair
    119270741
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tdc03032]
    119270741
   03400 DNA repair and recombination proteins [BR:tdc03400]
    119270741
Enzymes [BR:tdc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     119270741
    6.5.1.6  DNA ligase (ATP or NAD+)
     119270741
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     119270741
DNA replication proteins [BR:tdc03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    119270741
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     119270741
DNA repair and recombination proteins [BR:tdc03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     119270741
   NER (nucleotide excision repair)
    Other NER factors
     119270741
   MMR (mismatch excision repair)
    Other MMR factors
     119270741
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase TrmB
Other DBs
NCBI-GeneID: 119270741
NCBI-ProteinID: XP_037408693
LinkDB
Position
1A:complement(320358369..320365467)
AA seq 893 aa
MFLPRATTSLHSLLRCQFRPLPSPKTLAITLAPPPLLLRPRRLCSSSSSSRRAPPAAAKS
VEKRPPARLKRAEAVKPLAAGGAAMSSSGGAGGKRSVADVLMGNARDAARKAKKGAPAAS
GVPSPKKPRTKTTAEADGATAEPAVDEKPPSPAKSPVKSKRPSSPPKSKSKADDAPEAKK
RSPSPTRSKTLAAAAKLEAAEKPLSPKRAKALAAKSDAKPSDQAPVSQSKDQASQSDDKK
TKISNATKSEEVNTTLELKKKGSEFDPMAAACWKPGEPVPFLFLARALDLISNESGRIVI
TEILSNVFRTTIATTPEDLLATVYLSANRIAPPHEGIELGIGDASIIRALSEAYGRKEEH
VKKNLKELGDLGLVAKASRSSQKMMYKPKPLTISRVLDTFRTIAKESGKDSQDKKRSHIK
GLLVAATDCEPQYIIRLLQSKMRIGLAEKTVQMALGQAAVYSEKGSPPKKVQSPFEEAAK
IIKEAYSVLPIYDKIVPTLLDAGVWKLPETCNFSIGVPVGPMLAKATKSVSEIIDKFQGR
EYTCEYKYDGERAQIHCMEDGTVEIYSRNAERNTGKYPDVVDAISRIRKPTVKSFVLDCE
IVAYDREKKRILPFQILSTRARKGVTINDIKVSVCTFGFDILYINGKPLLQEQLKVRREH
LYNSFEEVPGVFQLATAITSNDLEEIQKFLDLSVNSSCEGLIIKTLDTDATYEPAKRSNN
WLKLKKDYMDSVGDSLDLVPIAAFHGRGKRTGVYGSFLLACYDEHNEEYQTICNIGTGFS
EQQLEERSTSLRSKVIKNPKAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGI
VDPNKGISLRFPRLLRVRDDKNPEHATTAEQVADMYRAQKINHSHNQEDEDDD
NT seq 2682 nt   +upstreamnt  +downstreamnt
atgttcctccctcgagccaccacctcgctccactccctgctgcgatgccagttccgcccg
ctcccctcgcctaaaaccctagccattaccctcgccccgccgcccctgctcctccgcccc
cgccgcctctgctcctcctcctcctcctcccgccgcgccccccctgccgccgccaaatcc
gtcgagaagaggccgcccgcgaggctgaagagggcggaggcggtgaagccgctagccgcg
gggggagcggccatgtcgtcctcgggaggcgccggggggaagcgctccgtggcggatgtg
ctcatggggaacgcgcgggacgccgccaggaaggccaagaagggggccccggccgcctcc
ggggtcccgtctccgaagaagcccaggacgaagacgaccgccgaggccgacggcgcgacg
gccgagccggcggtggacgagaagccgccttcgccggccaagtcgcccgtcaagtcgaag
cgcccgtcgtcgccacccaagtccaagtcgaaggccgacgacgctcctgaggcgaagaag
aggtccccgtcgcccacgaggtccaaaacgctagccgcggccgcgaaattggaggccgcg
gagaagcccctgtcgccgaagagggccaaagccctagcggccaaatctgacgccaagccc
tctgaccaagcccctgtctctcaatctaaagaccaagcgtctcaatccgatgataagaag
accaaaatctcaaatgccaccaagtcagaggaggtgaataccactctcgagctcaagaag
aaaggcagtgagtttgatcccatggctgctgcctgctggaagcccggagaacctgtgcca
ttcctgttcctggctcgggcactcgatctcatttccaacgagtctggacggattgtcatt
acagagatcctgtcaaacgtgttccgtacaactattgccacaacaccagaggatctcctt
gcgacagtatacctctcggctaaccggattgcgccacctcacgaagggattgagcttggt
attggggatgcatcaatcatccgtgcactttccgaggcatatggccgcaaagaggagcat
gtcaaaaagaacctcaaggaattgggtgatttggggctcgtggcgaaagcaagcaggtca
tcacagaagatgatgtacaagccaaaaccactgacaatatcacgtgtgcttgataccttt
cggacaatcgcaaaggaatctggcaaagacagtcaagataagaaaagaagtcatatcaaa
ggacttcttgtcgctgcaacagactgtgaacctcaatacattatacgacttcttcagtcg
aagatgcgtattgggttggcagagaaaactgtccaaatggctcttgggcaagctgctgta
tattctgaaaaagggtccccgccaaaaaaagtccaatcacctttcgaagaggctgcaaaa
ataattaaagaagcatattcagttcttccaatctatgataaaattgtcccgactcttctt
gatgctggagtttggaaacttccagaaacatgcaatttctccataggcgtccctgttggt
cctatgttggcaaaagcaacgaaatctgtctcagagattattgacaagtttcaaggtcgt
gagtacacttgtgagtacaagtatgatggtgaacgggcccagattcattgcatggaggat
ggaacagtagaaatttatagtcggaacgctgaaaggaataccgggaagtaccctgatgtt
gttgatgcaatttctagaatccgaaagcctacagttaagtcatttgtcttagattgcgaa
attgttgcttatgaccgcgaaaagaagagaattttaccctttcagatactcagcacaagg
gcccgcaagggtgttactataaatgacatcaaagtatcagtctgtacttttggctttgat
attctttacatcaatgggaaacctcttctccaggaacaacttaaagttcgccgagagcat
ctttacaactctttcgaggaagtgccaggtgtttttcaactggcaactgcaattacatca
aatgacctcgaggagatacaaaaatttcttgacttatctgtcaactccagttgtgaaggg
ttgattatcaagacattggatacggatgctacatatgagccagcgaagcggtcaaacaat
tggttgaaattgaagaaagattacatggacagtgttggagattctttagacttagtgcca
attgctgcttttcatggaagaggaaaacgaacaggtgtatatggatcgttcctcttggca
tgctatgatgagcataatgaagaataccaaacaatctgcaatataggtactggattttct
gagcaacaacttgaagagcgttctacgagccttcgaagtaaagtaataaagaacccaaag
gcatattataggttcgctgacacgactgacccagatgtgtggtttgagccgtcagaggtg
tgggaggtcaaagctgctgatttgagcataagtccagttcatcgcgctgctaatgggata
gttgatccaaataagggcatctctctaagatttcctcgtttgttgcgggtgcgtgatgat
aaaaacccagaacatgcaaccacagctgagcaagttgctgacatgtatcgtgctcaaaaa
ataaaccactcgcacaaccaagaagatgaggatgatgactga

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