Triticum dicoccoides (wild emmer wheat): 119274414
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Entry
119274414 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119274414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119274414
03012 Translation factors [BR:
tdc03012
]
119274414
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119274414
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119274414
Translation factors [BR:
tdc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119274414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
nSTAND3
AAA_19
NACHT
AAA_16
PhoH
ATPase
Motif
Other DBs
NCBI-GeneID:
119274414
NCBI-ProteinID:
XP_037411006
LinkDB
All DBs
Position
3B:complement(14783967..14793372)
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AA seq
1247 aa
AA seq
DB search
MLLASSVLRGRLRPLRRPRPPIMPSPLFLSRNPSPSPSTGSSASPQLPSPSAMSTSGVYV
PPMRRLRSVIASTNGNLAPPPAVQPAWTPEWRADGRSLSPPSPPQPQQRRSAALPPRPPP
PQTQPLRQQSAGYSRYAYDDFSEEESDREMDRTSVSSKGGGSTLENVDEWKWKLHMLLRN
DNEQEIMSREKKDRRDFDQLAQLADRMGLHSRQYSRIIVFSKVPLPNYRSDLDDKRPQRE
VSIPSGLQREVDALLADYLARKRTDSGNFPNAAFSRSSSTDSFATDESFYEQQDNQTSTN
VVMERIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAQKERQSLLEAISQNQVVVVSG
ETGCGKTTQLPQYILESEIEAARGATCSIICTQPRRISAISVSERVAAERGEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLVLMSATLNAEMFSSYFGGAPMIHIPGFTYPVRSRFLEDILEVTGHRLTPYN
QIDDYGQEKSWKMQKQALRKRKSQIASVVEDAVKAADLRDYSPQTRDSLSCWNPDSIGFN
LIENVLCHICQKERDGAVLVFMTGWDDINTLKDQLQSNPLLGDPSKVLLLACHGSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQSGECFHLYPQCVYNVFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVAGLSVRDPFMTPFDKKDLAESAKLQFSCRDYSDHLAIVRAYDGWRDAERD
RNGYDYCWRNFLSAQTLKALDSLRRQFLFLLKDTGLIDENMTMCNKWSRDENLVRAIICA
GLYPGVSSVVNKEKSVSLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGNIQQGGLDGHLKMLGGYLEFFMSRDLASTYLNLKGELENLIHCKLQ
NPRIDIQTSEELLSAVRLLVTEDPCSGRFVYGRQEPRSKKAKTMISSASVVSMDRGGGGG
HGGDNPKNQLQTLLTRAGHDNPSYKTKQIKNTLFRSTVEFNGMQFVGQPCANKKLAEKDA
AGEAISWLTGGEAPPPTANARGRQDADPMSVLTKPATRRRRHHHRRS
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctcctcggtgctgcggggtcgcctccgccccctccgccggccccggccc
ccgatcatgccctcccctctcttcctctcccgaaaccctagccccagccccagcaccggc
agcagcgcgagcccccaactcccctcgccttccgccatgagcaccagcggcgtctacgtg
ccgccgatgcgccggctccgctccgtcatcgcgtccaccaacgggaacctcgcgccgccg
cccgccgtgcagcccgcgtggacgcccgagtggcgggccgacgggcgctccctcagcccg
ccgtcgccgcctcagccgcagcagcgccgctcggctgccctcccgccccggccgccgccg
ccccagacgcagcccttgcggcagcagagcgcgggctattctcggtacgcctatgacgac
ttctccgaggaggagtcggaccgggaaatggaccgcacgtcggtgtccagcaaggggggt
ggatctactttagagaatgttgacgaatggaaatggaaactgcacatgcttctccgtaac
gacaatgaacaagagattatgtcgagggagaaaaaggacaggcgtgattttgatcaactt
gcccaactggcagatcgaatgggtttgcacagccgtcagtattcccgaatcatcgtgttt
agtaaggttcccttgcctaattatagatcagaccttgatgacaaaagacctcaaagagag
gtatctataccttctggcttgcaaagagaagttgatgcattgcttgcagactatcttgcg
cggaagagaacagacagtgggaactttcctaatgctgccttctcaaggtcaagcagcacg
gacagtttcgcgactgatgaaagcttctatgagcagcaggataatcagacatcaaccaat
gttgtgatggaaagaatccaaagaaggaaaagcttacagttgcgtaaccagcaagctgct
tggcaggaatcaaatgatggtcagagcatgatggagtttcgtcgaagtcttcctgcccag
aaagaaaggcaatcactattggaagctatatctcagaatcaggtggttgtagtttcaggt
gaaactggctgtggtaagacaacacagttgccacaatacattttggaatctgaaatagaa
gctgctcgtggtgctacttgcagtatcatttgcactcaaccaagacgaatatcagctatt
tctgtttctgaaagagttgctgctgaaagaggtgaaaaaattggggaatcggttggctac
aaagttcggctggaaggaatgagaggaagggatacacgccttctgttctgcactactggg
gtcctgttgcgaagattgctggtggacagaagcttgaaaggtgtcacccatgttattgtg
gatgaaattcatgaacggggcatgaatgaagattttctccttattgtcctaaaggacctt
cttccacgccgaccggagctaaggcttgtattgatgagtgcgaccctcaatgctgagatg
ttctcttcatactttggtggagcacccatgatacatatacctggttttacataccctgtc
cggagtcgtttcctagaagatattcttgaagttactggccacagattgactccgtacaat
cagatcgatgactatggccaagagaaaagttggaagatgcaaaagcaagctctacggaag
agaaagagccaaattgcttctgttgtggaagatgcagttaaagctgcagatctaagggat
tatagtccgcaaactcgtgactctctatcctgctggaatcctgattcaattggttttaac
ttgatagaaaatgtcttgtgccatatttgtcaaaaggaaagagatggtgctgtacttgta
tttatgactgggtgggatgacattaatacgctaaaagatcagctacaatccaacccattg
cttggcgaccctagtaaagttttgctgcttgcatgtcatggttcaatggctagctcagag
cagaaactaatatttgacaaacctgagcctggtgtaaggaaaatagttcttgccaccaat
ttggctgaaactagtattaccatcaatgatgtggtttttgttgttgattgtggaaaagca
aaagagacatcttatgatgcactgaacaatactccctgtctgcttccaacctggatctcc
aaggcttctgctagacaaagacgaggaagagctggccgagttcaatcaggggaatgtttc
catctctatccacagtgtgtatataatgtgttcgctgactaccagttgcctgaacttctg
agaacccctctccaatccctctgtttgcaaataaaaagcttgcggcttggtagcatctca
gaattcttatccagagctttgcaatcacctgagtctctatcggtacaaaatgccatcgaa
tatctcaaagtcattggagcattcgatcagaatgaagagttaacagttctaggaaagcac
ctgtctatgcttccagttgagcctaaattaggcaagatgcttatttttggggctatattt
aattgccttgatcccatattaaccatcgttgctgggcttagcgtaagagatccattcatg
acaccatttgacaagaaggatcttgcggagtctgctaagttgcagttttcatgccgtgac
tatagtgaccaccttgcgattgttcgtgcatatgatggatggagagatgctgaaagagac
cgcaatggctatgactactgctggagaaattttctgtcagcgcaaaccttgaaagcccta
gattctctccggaggcagttcctctttcttttaaaggacactgggttgattgatgaaaac
atgactatgtgcaataaatggagtcgcgatgaaaatctagtccgggctatcatttgtgcg
ggtttatacccaggtgtttcgtctgttgtgaacaaggagaaatcggtttctctcaagaca
atggaggatggacaggtcatgctttactcgagttcagttaatgggaaagaagccaagatt
ccattcccctggctagtattcaatgagaaagtgaaggtgaattcagtgtttctccgggat
tcaacagcgatatctgattctatattgctgctctttggaggaaatatacaacaagggggc
ttggacggacacttgaaaatgctcgggggatatctggagttcttcatgagtcgtgatctt
gcatcgacttacttgaatctcaagggtgaacttgaaaatttaatccactgcaagcttcaa
aacccaaggattgacatccaaaccagcgaggagctgctgtcagccgtacggctgctggtc
acggaggacccatgcagcggccggttcgtctatggccggcaagaaccaaggtcaaagaaa
gcaaagacgatgatctcttccgcctcggtggtctccatggaccgcgggggcggaggcggg
cacggaggtgacaaccccaagaaccagctgcagaccctcctgacgagggcggggcacgac
aacccgtcctacaagacgaagcagatcaagaacaccctcttcaggtcgacggtggagttc
aacggcatgcagtttgtggggcagccgtgcgccaacaagaagctggcggagaaggacgcg
gcgggggaggcgatcagctggctcacgggcggggaggctcctcctccgacggccaacgcg
agaggccggcaggacgcggaccccatgtcggtgctgacgaagccggcaacacgcaggagg
cggcaccaccataggaggagctga
DBGET
integrated database retrieval system
