Triticum dicoccoides (wild emmer wheat): 119275002
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Entry
119275002 CDS
T07278
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119275002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119275002
03009 Ribosome biogenesis [BR:
tdc03009
]
119275002
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119275002
Spliceosome [BR:
tdc03041
]
Complex A
U1 snRNP components
U1 related factors
119275002
Complex B
119275002
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
Helicases
119275002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
119275002
NCBI-ProteinID:
XP_037411675
LinkDB
All DBs
Position
3B:complement(98012982..98020517)
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AA seq
1355 aa
AA seq
DB search
MAGAEAAADSSGPRFAPDDPTLPAPWKALIDGETLYYWNPETNLTQYDKPGAAAPPVPAA
APAPAPGAFAQPGMQQQQQPQQQQTAQQPPFQYQGQQAQQLQFQYQQQQQQQQQEQMPNQ
QGSQQPLAPQYPNAHQQPMPYQHGHYMQPQQQYSYQVGQQQQMPQTQYNQGQQMPIPQAA
NQGQQPTMPPGAYNQGQRPLMPQAAYSHGQRPPMPQSAYNQGQQPQMPHASYNQGQQLQG
TRMPHTQVQHAQQSPGFHQPAQASQGLQASQPQVPQMSPQQGQLQHGFQFTPQQGKQPHH
GHLVTQHGQQNTTAKVDAGAHPEGKQTGFSLPLSQQHGQVPLSNQTLPSSHQRPEAHNQV
NIHGVGGPPYPAKHHLGGSSPGETNNVSFLSAPAQTHQGGVDTNYRQQLASSHVVPNHIA
PSPGRPPMGFKRGNSEDQFEKNEPLSSGRFDGINALHQQPKLAALPPSQNHLRDMRNGPP
YSQPDNFGGYNMAPPHLVQNPLNNGPFPIGALTRPPSGTFSPPDFPSVASVDAYRQHHEV
TAVGENVPPPFMTFEATGFPPEILSEVHAAGFLNPTPIQAQTWPVALQSRDIVAIAKTGS
GKTLGYLIPAFVHLRRCQNNPMSGPTVLVLAPTRELASQIQDEAIKFGRSSRVSCTCLYG
GAPKGPQLRELERGADIVVATPGRLNDILEMRKISLRQISLLVLDEADRMLDMGFEPQIR
KIVDEIPRNRQTLMYTATWPKEVTKIAGDLLRNPVQINIGSIDELVANKSITQYVEMVPP
MDKQRRLEQILRAEERGSKIIIFCSTKKMCDQLARSIGRSFGAASIHGDKSQGERDHILG
QFRAGIVPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVAYTFF
SEQDWKYAADLVKVLDGTGQQVPPELQQMAARGASGAPRNQAGGMSRWDGPGGGSRFESA
VGGPGGYGGIREGPGGFGGRDGPGGFVDRDGPGRFGDRDGPGRFGGRETPDGFGGRDGPG
GFDGRMGPGPGGFGGREGPGGFGGREGPGGFGGREGPGGFGGREGPGGFGGREGPGPSGF
SGRGGRGSDGFGRRGGASPGRFGGHGGRGDSPGFGGRGRGDSSGFGGRGRGDFSGGRGGR
GRGFGGRGCSDRGPHDRFISDGRGRYDGRRGFDKGRGSSYSRSPDRSRSRGYDRRSDSRS
LSSRSRSRSRSWSRSRSRSRSWSRSCSRSRSRSRSRDQGPVERRPRVRSGFDVLPPATEA
GAAVTGPLPVPLPGSVSDGTAPIPRQSLADASDMSPMSPGGLVHVQEGAPFMGGNDANIS
SRQADQPSQATDLAIPPSFSAAANFPGPAVQQDAP
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcagaggctgccgcggattcatcgggcccgcgattcgcccctgacgacccg
acgctccctgcgccttggaaagcactaatcgacggcgagacgctctactactggaaccct
gagacgaacctcactcagtatgacaagccgggtgcggccgcgcctcccgtgccggcggct
gcgccagcgccagcgcccggggcttttgcgcagcctggcatgcagcagcagcagcagcca
cagcagcagcagacggcacagcaaccgccgtttcagtatcaaggtcagcaagcacagcaa
ctgcagtttcagtatcagcagcagcagcagcagcagcagcaagaacagatgccgaaccag
caggggtcacaacagccactagctcctcagtacccaaacgctcatcagcagccaatgcca
tatcagcacggtcattatatgcaaccccagcagcaatattcatatcaggtaggccagcag
caacaaatgccgcaaactcagtataatcaaggtcagcagatgccaatcccgcaagctgcc
aatcaaggtcagcagccaacgatgccaccaggagcttacaatcaaggtcagcgtccactg
atgccgcaagctgcctacagtcatggccagcgcccccctatgccacaatctgcctacaat
caaggccagcagccacaaatgccgcatgcttcttacaatcaaggtcagcagttgcaggga
acaaggatgcctcacactcaagtgcaacacgcacaacaatcaccaggctttcatcaacct
gcccaggcttcacaagggttgcaagcttcacagcctcaagtacctcaaatgtccccccaa
cagggccaactccagcatggcttccagttcacccctcaacagggaaaacaaccacatcat
ggtcatcttgtcacccaacatgggcaacaaaataccacagcgaaggttgatgcaggagct
catcctgaaggaaagcagactggcttttccttaccgcttagtcagcagcatggccaagtt
cctctttcaaaccagacgttgccttctagtcatcaacgtcctgaagcccataatcaagta
aatattcatggagtcggagggccaccatatcctgcaaagcatcatcttggcggatcatcc
ccaggtgaaactaataacgttagtttcttgagcgcacctgctcaaacacatcaaggcgga
gtggatactaattaccggcaacaactggctagtagccatgtagttcccaatcatattgct
ccttcaccaggtcgacctccaatgggtttcaagagaggcaatagtgaagatcaatttgaa
aaaaatgagcctctctcctctgggaggtttgatggaataaatgctctccatcagcagcca
aaacttgctgctcttccaccctcacaaaaccacctgcgggatatgaggaatggcccacct
tattcccagccagataattttggtggttataacatggcacctccacatttggtacaaaac
ccacttaacaatggtccatttcctatcggagctttaacgaggccaccatccggaacattt
tctcctcctgatttcccaagtgtcgcttcagttgatgcatatcgtcaacaccatgaagta
actgcagtgggcgagaatgttcctcctccatttatgacatttgaggctactggattcccc
cccgagatcctgagcgaggttcatgctgctggcttcttaaaccccaccccaattcaggct
caaacatggcctgttgcacttcaaagcagggacatagtagctattgcgaagacaggatcg
gggaagacactggggtaccttattcctgcttttgtacatctgaggagatgccaaaacaat
ccaatgtcgggtcctacagtgttggttttggcccctactcgtgagcttgcttcacaaata
caagatgaagcaattaagtttggtcgatcatctagagtgtcatgcacatgcctgtatggt
ggagctccaaagggacctcagctcagagaacttgagcgtggagcagatattgtggtagct
acccctggacgactcaatgatattctggaaatgaggaagattagtctccgtcagatttca
ttacttgtgcttgatgaagctgaccgcatgcttgacatgggctttgagccacaaatacgg
aagattgtggacgagattcctcgtaatagacaaactctgatgtacactgccacttggcca
aaggaggttacaaaaatagctggggatttattgagaaatcctgtccagatcaatattggt
agcattgatgaacttgttgccaacaaatccatcacacagtatgtagagatggttccaccc
atggataagcagcgtcgcttggagcagattcttagagctgaagaaaggggctcaaagatc
atcatattttgctcaaccaagaaaatgtgcgatcagcttgctcgtagcattggtcgtagt
tttggtgctgcaagcattcacggcgacaaatcacagggtgaaagggatcatattctaggt
cagtttcgggctggtattgtgccagtattagtggccacagatgttgctgctcgtggactt
gacatcaaagacatcagagtggtgatcaattatgacttcccaactgggatcgaagactat
gtgcatcgcatagggcgtacaggaagggctggggctactggagttgcatacactttcttc
tctgagcaagattggaaatatgctgctgatttggtgaaagtcttggatggtactggtcag
caggtacctccagagctgcaacagatggctgcacggggtgcgtctggtgctccaagaaac
caggctggtggcatgagccgttgggatggtcctggtggtggtagtcgttttgaatctgct
gttggcggccctggtggctatggtggaattagggagggccctggaggctttggtggtcga
gatgggccaggtggatttgttgatcgggatggcccgggcagattcggtgatcgagatggc
cccggccgctttggtggtcgagagactcctgacggctttggtggtcgggatggccctggt
ggctttgatggacggatgggccctggtcctggtggctttggtggacgggaagggcctggt
ggatttggtggaagggaggggcctggtggatttggtggaagggaggggcctggtggattt
ggtggaagggaggggcctggtggatttggtggaagggagggtcctggacctagtggcttc
agcgggagaggggggcgtgggtctgatggctttggcaggagaggtggagcaagccctggt
agatttggtggtcacggtggcaggggtgattctcctggttttggtggtcgtggtaggggt
gattcttctggttttggtggacgaggccggggtgatttctctggtggacgtggtggaaga
gggcgtggatttggaggacggggatgttctgaccgaggtccacatgatcgttttatctca
gatggacgtggaaggtatgatggccgtcgaggatttgacaagggtcgaggcagtagctac
agccgtagcccagatagaagccgctcgcgaggctatgacagaagaagtgatagcaggagc
ctaagtagtaggagcagaagccgtagcagaagctggtcacgcagcaggagtcgcagcagg
agttggtcacggagctgcagccgtagtcgcagcaggagcagaagccgtgatcagggtcca
gtagaacgcaggccacgggtaagatctggttttgatgtgctgccacctgcaactgaagct
ggagctgctgtaactgggccacttcctgtaccactacctggttcagtgtctgatggtact
gcacccatacctagacaatcgctggctgacgcatctgatatgtcacctatgtcgcctggt
ggcttggtccatgtccaggagggtgcaccgttcatgggtgggaacgatgccaacattagc
agcagacaggctgaccagccttcccaagcgactgatctagcaataccaccgagcttctct
gcagctgcaaattttccagggccggcagttcagcaggatgccccatga
DBGET
integrated database retrieval system
