Triticum dicoccoides (wild emmer wheat): 119275105
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Entry
119275105 CDS
T07278
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119275105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119275105
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119275105
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Step II factors
119275105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
IBR_1
zf-RING_UBOX
AAA_19
RRM_1
AAA_22
ResIII
nSTAND3
HA2_N
RRM_9
ABC_tran
AAA_29
Arc_MA
SLFN-g3_helicase
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-GeneID:
119275105
NCBI-ProteinID:
XP_037411787
LinkDB
All DBs
Position
3B:complement(124493076..124503280)
Genome browser
AA seq
1745 aa
AA seq
DB search
MRPSQDRRPFRPPDRFSPPPHLHRQPPPHARQFAVILLRAGPSFSSPPATEVDALVAGLQ
SPPPDNLSVCSAGRQAARLLFRSLPAAAAAARELWSLRLDGLHLLTPYLPDAALASHAFP
LVASLFASHASRLLDSGLVSRSAARSAELAVSIQSVKRRLRGHNNFRDFDQFNLQKKTLE
AEKELVDAKIAEYKAAMSSIRRAMLRGTDDEEEVEEEGVDVFGIGEGEDVDFVRLHMMMM
RECRRLNEGLPIYSYRRKILNHIFNNQVMILIGETGSGKSTQLVQFLADSGLSGNDSVVC
TQPRKIAALSLAHRVDEESKGCYADNFVSSYSSFLNYQNFSSKIIFCTDSCLLHHCMNDA
DLNGISYIIVDEAHERSLNTDLLLALIKQKLLDRLDLRLIIMSATADANRLAEYFYGCQT
FHVKGRNFPVEIKYVPDVSVDASFNIVPNSLCGPCAAASYVNDVIRQVSIIHKNEEEGAI
LAFLTSQLEVEWACENFTDASAVVLPMHGKLSPVEQSRVFKSYSGMRKIIFCTNIAETSL
TIKEVKYVVDSGLVKDSRFVPSSGLNVLKVNWISQSSANQRAGRAGRTGVGKCYRLYSEA
DFSMMELHQEPEIQKVHLGTAVLRILALGVKDARNFEFVDAPNPEAINMAVKNLEQLGAV
KCNCNCYELTDTGRHLVKLGIEPRLGKIMLDCFGFGLRKEGVVLAAVMANSSSIFCRVGT
DEEKHKADLQKVRLCHQDGDLFTLLAVYKKWEDGHENRNMWCWQNSINAKTMRRCQETIS
ELENCLKHELKIIIPSYWCWNPEAPSEHDKLLKRIILSSLAGNLAMFLGHERFGYQVIST
DQIVNLHPSCSLLNYGTKPDWVVFSEILSVPNQYLVCVTAVDHDALYAIHPMSSIQQLEK
HKLQIKVISGLGNNLLGKFVGKSGQNQQKIISRLKEDCRDDRVTVEVNFNNNEVVLFATA
QHMEKVFCIVNNALECEGKLMRNECLERSLFPERSGSSPIALFGSGAEVKHLELGKRYLT
VEVLHQNANDINDKELISLVDSLVSGVANFHKSSGNFRLGSGETKWGKITFLKPENAEDA
VSKLNGVEFYGSSLKIVPVCSPDNQGLRFPSVRAKLCWPRKESRGLALVTCASGEAQSVV
DDCFALGIDGRYISCRVSKKEENCVFVERIPLHVSEPELYDAFRSTTTRRILNIRLLRVK
EATIASPSVSVCEEALIREISPFMPNKSFPGKSFCVEVFPPEENDSMMRATLTFDGNLHR
EAARALDHLEGSILPCCQPWQIIQCKHVFHSTMSCSVRVYNVISQEVTSLLESFRSQKGV
SYNYEKTENGIFRVKLTANATKTIADLRRPLEILMKGKTINHPDLTLSAVQMLLSRDGVA
HLKSIEQETGTYILYDRQSLNIKVFGHQHHMAEAEAKLVHALPQLLEKRPLEICLRGHNL
PPDLMKKTVENFGVDLEGFKTVTPSVKVELHKHRHILKVWGSKEDKRRVEGMISELITSV
KHNVPVHLPSENFGGGKEDNQRVADNELSMDACPICLCETEDPFKLESCGHIFCRACLVD
QCEVATKSHDGFPVCCLKTGCKKPFLIVDLKHLVSNEKLEDLFRASLRAFVASRAGIYRF
CPTPDCRSIYQVAAPDAETRPFVCGACYVEICTKCHLEYHPFISCEAYKEYKEDPDATLL
EWRKGKENVKNCPSCGYTIEKAEGCNHVECRCGCHICWACLANFRSSEECYGHLRSAHQS
FVDIV
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgtctcaggaccgccgccccttccgcccgccggaccggttctcgccgcctccc
cacctccaccgccagccgccccctcacgcgcggcagttcgcggtgatcctcctccgcgcg
ggccccagcttctcctccccgccggccacggaggtcgacgccctcgtcgcgggcctccag
tcgccgccccccgacaacctctccgtctgctccgccggccgccaggccgcccgactcctc
ttccgctccctcccagccgccgcggccgccgcgcgcgagctctggtcgctccgcctcgac
ggcctccacctcctcaccccgtacctccccgacgccgccctcgcctcccacgccttcccc
ctcgtcgcctccctcttcgcctcccacgcgtcccgcctcctcgactccggcctcgtctcc
cgctccgccgcccgctccgctgagcttgcggtctccatccagtctgttaaacgccgcctt
cgcggtcacaataacttccgcgacttcgatcagttcaatctccagaagaaaacattggag
gctgagaaggaattggtagatgccaaaattgccgagtacaaagcagcgatgagttcgata
aggcgtgccatgttacgtgggacggatgacgaggaggaggtggaggaggaaggggtggat
gtgtttgggattggggaaggagaggatgtggactttgtgaggttgcacatgatgatgatg
cgcgagtgcaggaggctcaacgaggggctaccaatctactcataccgcagaaagattctc
aatcacattttcaataaccaggttatgatcttaatcggggaaactggttctgggaaaagc
acacaactagttcagtttcttgctgactcaggtctttctggtaatgattcagttgtctgt
acgcaacctcggaaaattgctgctttatcattggcacatagagtcgatgaagaaagcaag
ggctgctatgcggacaattttgtgtcgtcatattcaagctttttgaattatcaaaacttc
agttcgaagattatattttgcacagatagttgtcttctacatcactgtatgaacgatgcg
gacctgaatggcatttcctatatcattgttgatgaagctcatgaaagaagtttgaacacc
gatcttctcttagctttgatcaagcagaagctgcttgataggttggatttgcgactcatt
ataatgtctgccactgctgatgctaatagacttgctgaatacttttatggctgccaaaca
ttccatgtgaaagggagaaattttcctgttgaaattaaatatgtacctgatgtatcagtt
gatgcttctttcaatattgtgccaaactctttgtgtggtccttgtgctgctgcttcttat
gtcaatgatgttataagacaggtaagcatcatccacaagaatgaagaagagggtgccatc
cttgctttcttgacatcccagctagaagttgaatgggcttgtgaaaatttcaccgatgca
agtgcggtggtacttcctatgcatggaaagctttcccctgtggaacagagtcgtgttttc
aaaagttattctggaatgagaaaaattatcttctgcaccaatatagctgaaacatcactt
actataaaagaagtgaagtatgttgttgattctggactggtcaaggacagcagatttgtg
cctagcagtggtcttaatgttctgaaagtcaattggatttcccaaagttcagctaatcaa
cgcgctggccgggcaggtcgaacgggagtggggaagtgttatagactttactccgaagcc
gacttcagtatgatggaactgcatcaagaacctgaaatccaaaaagttcatcttggcact
gctgttctaagaatacttgctttgggtgttaaagatgcacggaattttgagtttgttgat
gccccgaatccagaagcgatcaatatggctgtgaagaaccttgaacagttgggtgctgtc
aaatgtaattgtaattgctatgagctgactgataccggacgccacttggtcaaattggga
attgagccaaggcttggaaaaattatgcttgattgctttggttttggtttgaggaaggaa
ggtgtagttttagctgcagttatggcaaattctagcagcatcttttgtagagtgggcact
gatgaggagaaacacaaagctgaccttcagaaagtccgtttgtgtcaccaagatggagat
ctgttcactctactcgctgtttataagaaatgggaggacgggcatgaaaacaggaacatg
tggtgttggcagaacagcatcaacgccaaaaccatgaggaggtgccaggaaactatatca
gaacttgaaaattgtctaaagcatgagttgaaaattataatcccaagttattggtgttgg
aatcctgaggctcccagtgagcatgataagttgctaaaaagaattatcctgtcatctctt
gcaggtaatcttgctatgtttttaggacatgaaaggtttggttaccaggtgatttcgaca
gatcagattgtgaaccttcatccctcatgctcattgctcaattatggtaccaagccagat
tgggtggtgttttcagaaatcttatccgtcccaaatcaatatctggtatgcgtaactgct
gttgatcatgatgctttgtatgcaattcacccaatgtcttccattcagcaactggagaaa
cataaattgcagataaaggtgattagtgggcttggtaataacttgctgggaaaatttgtt
ggcaaatctggccaaaatcagcagaagatcatctcacgtctcaaggaagattgcagggat
gaccgagtaactgtcgaagttaactttaacaataacgaagttgtgttatttgctaccgca
cagcacatggaaaaggtcttttgcattgttaacaatgctttggaatgtgaaggtaagttg
atgaggaacgagtgccttgagagaagtttatttcccgagaggtcaggcagttctcctatt
gcactatttggctcaggtgcggaagtcaaacatttagaacttgggaagagatatctgaca
gtagaggttctacatcaaaatgcaaatgacatcaatgacaaggagcttattagcttggtg
gatagtcttgtttccggtgttgctaattttcataaatccagtggaaatttccggctaggc
tcaggtgaaactaaatgggggaagattacattcctcaaacctgaaaatgctgaagatgct
gtctcaaaattgaacggggtagaattttatggttcctctctaaaaatagttcctgtatgt
tctcctgataatcaaggtttacgatttccttcagtaagagctaaattatgttggccacgt
aaggaaagcaggggccttgcacttgtaacatgtgccagtggggaagctcaatctgttgta
gatgactgctttgccttaggaatcgatggaaggtatatcagttgtagggttagtaagaag
gaggagaactgtgtatttgtcgaaagaattccattgcatgtatcggagccggaactatat
gatgcttttcgcagcacaacaacaaggagaatccttaatatccgtctgctcagggtcaag
gaagccactatagctagcccctctgtttctgtatgcgaagaagcgctgattagagaaatt
tctccattcatgccaaacaagagttttcctggaaaaagtttctgtgttgaagtgttccct
cccgaggaaaatgactcgatgatgagagcaactttaacttttgatggaaatcttcatcga
gaagctgcaagagcactggaccatcttgaaggaagtattcttccttgttgtcaaccttgg
cagataatacagtgcaagcatgtatttcatagcactatgtcctgttcagtgcgtgtttac
aatgttatcagccaggaagtgacttctctgcttgagagcttccgaagccaaaaaggtgtg
tcttacaattatgagaagaccgagaatggtattttccgagtaaagctcactgcaaatgcc
acaaaaacaatagcagatctgagaaggccgcttgagattttgatgaaagggaaaaccata
aaccaccctgatctgacattaagtgcagttcagatgctcttatcccgtgatggcgtagcc
catttgaaatcaattgaacaagaaactggtacttacattttgtatgacaggcaaagtcta
aatattaaagtctttggacaccaacatcacatggctgaagcggaagcgaaattggtccat
gcacttccacagctccttgagaagcggcctcttgaaatttgtcttcgtgggcataacctc
cctccagacttgatgaagaaaacagtagaaaattttggagttgatctggaaggattcaag
actgtgacgccctcggtaaaggttgagttacataaacaccgccatatacttaaagtttgg
ggcagtaaagaggataagcgaagggtggaggggatgatctctgagctgataacctcagtt
aaacacaatgtcccggttcaccttccgtcagagaattttggaggcggtaaagaagataat
caaagggtggctgacaatgagctttcaatggatgcatgccctatttgcttgtgtgagacg
gaagatccttttaagcttgaatcgtgtgggcacatattttgtcgggcttgcttggtggat
cagtgtgaagttgcaacaaaatcgcatgatgggttccctgtttgttgcctcaaaactggg
tgcaagaagccattcctcattgttgatctgaagcacctcgtgtcaaatgagaagctggag
gacctattcagagcttccttaagggcatttgttgcatctagggcaggaatataccgtttc
tgcccaacaccggattgccgatccatctaccaggtggcagctccagatgcagagaccagg
ccttttgtctgtggggcttgctatgtggagatctgcaccaagtgccatctcgagtatcat
cctttcatatcctgtgaggcttacaaagaatacaaggaagacccagacgcaacacttctt
gaatggcgcaaagggaaggagaatgtgaagaactgcccttcctgtggatacacgatcgaa
aaagctgaaggctgcaaccatgttgagtgcagatgcggctgccacatttgctgggcatgc
ttggcgaacttcaggagtagcgaggagtgttatggccatctcagatccgcgcaccaatcc
tttgtggacattgtgtag
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integrated database retrieval system
