Triticum dicoccoides (wild emmer wheat): 119275425
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Entry
119275425 CDS
T07278
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119275425
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119275425
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Complex C specific factors
119275425
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_19
AAA_30
AAA_29
AAA_7
Cas3-like_C_2
AAA_23
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119275425
NCBI-ProteinID:
XP_037412159
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All DBs
Position
3B:complement(177461159..177477460)
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AA seq
701 aa
AA seq
DB search
MSRFWRPGSEKPSASLVDDEEGGVLFLPTNTNASSSSSGFGYASLERLRQRLPVYKYRKA
ILYLVERHATTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRVAE
EVGVKLGEEVGYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERS
ISTDILLGLLKKIQRRRPELRLIISSATIEARSMSTFFSNRRKNSLLKPADGLPNPEPAI
LSVEGRGYTVETHYLEEPVSDYLQAAVNTVLIIHEKEPPGDILVFLTGQDDIDAALKLLN
DEIQHLGKHYFDLVILPLYSGLPRGDQDLIFAPTSKGKRKVVISTNIAETSLTLEGVVYV
VDSGFSKQKCYNPISDLESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYYLNEMQS
DGIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEILFSLGILDEDAKLT
VPIGFQVAEMPLDPMISKMILSANDFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKL
RFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIEIRAQLVRVMKRFGIQL
KSCDRDMQAVRKAIIAGSFANSCHLEEYGQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVV
YQSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPAPH
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggttctggagaccggggtcggagaagccgagcgcctcgctcgtcgacgacgag
gagggcggcgtactcttcctcccgaccaacaccaacgcttcctcctcctcctccggcttc
gggtacgcgtccttggagaggctgaggcagcggctgccggtgtacaagtaccgcaaggcc
atcctctacctggtggagcggcatgccacgaccatcatcgtcggcgagacgggtagcggc
aagtccacgcagatccctcagtatctcaaggaggctggttgggctgagggcggtcgactt
ataggttgcacccagccaagaagattggctgtgcagacggttgcatcaagagtagctgaa
gaagttggtgtgaaacttggagaagaagtgggatatacaataagatttgaggatgaaaca
aacccgggcatgactatgatcaaatttctcacagatggggtactgattagagaaatgatg
gaagatcctcttctgagcaaatatagtgtcattatgatagatgaagctcatgaaagatcc
atttcaaccgacatattgctgggactcctgaaaaagattcaacgccgtcggccagagttg
cgcctaatcatttcctctgcaacaattgaagcaagatcaatgtcaacctttttcagcaat
aggcggaagaattcgttgctcaagcctgctgatggtttgccaaatccagaacctgctata
ctttctgttgaaggtagaggatacacagtagaaactcattatctggaagagcctgtctca
gactacttacaggctgctgtgaatactgttcttattattcacgaaaaggaaccaccaggg
gatattttggtgtttttaactggccaggatgacatagatgctgctcttaagttgctaaat
gatgaaattcaacatctgggaaaacactatttcgatttggtgattttgcccttgtactct
ggccttccacggggagaccaagatctcatctttgctcctacttcgaaagggaaaagaaaa
gttgtgatatcaacaaacattgctgagacatcattgactctggagggggtggtgtacgtt
gttgatagtggattttccaagcagaagtgttataacccgatttctgacctagagagtcta
gttgtcgcaccaatatcgaaagcttctgcaaggcaacgagcaggcagagctggaagggta
cgacctgggaaatgctttaggctttacacagaggaatattacctaaatgaaatgcagtca
gatggcattccagaaatgcaaaggtctaaccttgtttcctgcataatacagttgaaagcg
ctaggcatagacaacatcttgggatttgattggccagcttctccatcaccagaggcaatg
atccgggctctcgaaattctattttcactaggaatccttgatgaagatgccaaactaaca
gttcccattggtttccaagttgctgagatgcctctggaccccatgatctcaaaaatgatc
ttgtcagcaaatgattttggatgctctgatgagatattgacgatagcagcatttctatct
gttcagtctgtgtgggtttctatgcggggagtgaagaaggaatttgatgaggccaaactt
cggtttgctgctgctgagggtgatcatgtaacgttcctgaatatctacaaaggatttcac
cagtctggaaaatctagtcagtggtgttacaagaactttttgaatcaccaagcactgaag
aaggtcattgaaatcagggcacagcttgtcagggttatgaagaggtttggcatacagctg
aaatcttgcgacagagatatgcaggcagttagaaaggccattattgctggttcgtttgct
aattcatgtcatctggaggaatatggccagaatggaatgtataaaacaattaggacgtca
caagaagtttacattcatccatcttccgtactcttcagggttaatccgaagtgggtcgtc
taccagtctcttgtttcaactgacaagcactatatgcgtaatgttattgccattgaacca
tcatggcttactgaagctgcaccacatttctaccagttccgaacacccaatccagctccg
cactaa
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