Triticum dicoccoides (wild emmer wheat): 119275961
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Entry
119275961 CDS
T07278
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03015
mRNA surveillance pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119275961
09122 Translation
03013 Nucleocytoplasmic transport
119275961
03015 mRNA surveillance pathway
119275961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119275961
03041 Spliceosome [BR:
tdc03041
]
119275961
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119275961
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119275961
Spliceosome [BR:
tdc03041
]
Complex C
Other components
EJC/TREX
119275961
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119275961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
119275961
NCBI-ProteinID:
XP_037412792
LinkDB
All DBs
Position
3B:complement(308678664..308687536)
Genome browser
AA seq
428 aa
AA seq
DB search
MGEAKDAEVYEEDLVDYDEEVENAVDGAAANPSVDVVKKGYVGIHSSGFRDFLLKPELLR
AIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICNEFERFSKYLSETKVAVFYGGVHIKKHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQIVIFVKSVG
RASELNRLLCECNFPAICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagccaaggacgccgaggtgtacgaggaggatctcgtcgactacgatgaggag
gtggagaacgccgtcgacggcgcagccgccaacccttccgtcgacgtcgtcaagaagggt
tacgtgggaatccacagctcagggttcagggacttcctgctcaagccagagctgctccgt
gcgatccaggactgcgggtttgagcatccttccgaagtgcaacatgagtgcatccctcaa
gccattctcggaatggatgtcatctgtcaagcaaaatctgggatgggcaagactgctgtt
tttgtcctctcaactctccagcagattgatccggttgctgggcaagtagctgcacttgtg
ttatgccatacacgagagttagcataccagatttgcaatgaattcgagaggtttagcaag
tacctgtcagaaacaaaagttgctgtcttctatggtggcgttcacataaaaaaacacaag
gatttgttgaagaatgaatgtcctcacattgtggttggcacacctggaaggatcctagct
ctggctagagacaaggacctttcattgaagaatgtgaggcatttcattcttgatgaatgt
gacaagatgcttgattcacttgacatgcgtagagatgtccaggagatcttcaagatgaca
ccccatgataaacaagtgatgatgttttcagcaacactcagcaaggaaattcgcccggtt
tgcaagaaatttatgcaagatcccatggaaatttatgttgacgatgaggctaaactgacc
cttcatggtctagttcagcactatattaaactaagtgaggcggagaagaatcggaaattg
aatgatctcttagatgcgctcgacttcaaccaaattgtgatatttgttaaaagtgttggt
agagcttcagaacttaacaggctgctctgtgaatgcaattttcctgcgatctgcatacat
tcgggaatgacacaggaggagaggctgacccggtataagaacttcaaggaagggcacaag
aggatccttgtggctacggatttggttggcagggggattgatattgagcgtgtcaatatt
gtcataaactatgacatgcctgattctgctgatacatacttgcacagggttggaagggct
gggcgttttggaaccaaagggcttgcaataacatttgttgcttctgcctctgactctgac
gtcctcaatcaggtgcaagaaaggtttgaggttgacatcaaggagctgcctgagcagatc
gacacttcaacatacatgccatcttga
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