Triticum dicoccoides (wild emmer wheat): 119277112
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Entry
119277112 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119277112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119277112
03012 Translation factors [BR:
tdc03012
]
119277112
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119277112
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119277112
Translation factors [BR:
tdc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119277112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
R3H
HA2_N
Ank_2
AAA_19
Ank_5
AAA_22
ATPase
nSTAND3
AAA_16
ResIII
Ank
ABC_tran
AAA_23
Rad17
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
119277112
NCBI-ProteinID:
XP_037414232
LinkDB
All DBs
Position
3B:565388590..565399463
Genome browser
AA seq
1273 aa
AA seq
DB search
MARISVHPNLSLYHRPLLPQIAPPPRCPRRFPPGPPQQHTKGKATAAGSRQRGTRTGRRA
APNAAAAAPPPPPLRDDGMGRKGPKGAKNAAALTKAALAAMSEETTVRITTLLEDFRASD
AQVHTFEPSLTNQERAAVHAMCKKMGMISKSKGYGERRCLSVYKTKNTQGAVKEEGPSKL
GFSEEARQILLDLFTHYPPDDAELNGDAVKNPGDKAAKILWKTDTAFSRPAMQKHDIAKK
VKMLTSKLNDTRQLRKIGEGRSKLPIASFKDHISSTLENHQVVLISGETGCGKTTQVPQY
ILDHVWGKGESCKIICTQPRRISAMSVAERISVERGETVGDTVGYKIRLESKGGKNSSIM
FCTNGVLLRVLIGRVTNISKRQRAADDVIMGITHIIVDEIHERDRFSDFMLAILRDLLPM
YPHLHLVLMSATIDAERFSQYFNGCPVIQVPGHTYPVKTFYLEDVLSILQSVGDNHLNPE
TNDLGLDSVLTDDYKSSMDEAISIALVSDEFDPLIELISIEQNPEIFNYQHSETGVTPLM
VFARKGQLGDVCMLLSFGVDCSARDHDGKSALDWAQQENQVEAYEVIKKHMDCSPAKLPE
ENEQLKKYLATINPEHIDTVLIERLLRKICTDSNEGAILVFLPGWEDINQTRERLLASSF
RDSSKFLVLSLHSMIPSSEQKKVFKRAPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMK
EKSYDPYNNVSTLHTSWVSRANARQREGRAGRCQPGTCYHLYSRFRAASLPEFQIPEIKR
MPIEELCLQVKLLDPNSKIADFLKKTLDPPVTETVKNAITVLQDLGALTQNEQLTDLGEK
LGSLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFVLPMAPDERKRAAAAKVELAS
LYGGYSDQLAVVAAFDCWTCAKVKGQEALFCSKYFVASNTMNMLSSMRKQLHSELTQRGF
LPADTSACSLNAKVPGIISAVLVAGAYPMVGRLLPPRKNARRAVLETASGAKVRLHPHSS
NFNLSFNKSSGNPLMVFDEITRGDGGMYVKNCSVIGSYPLLLLATEIAVAPPDDVSDEDD
EGSSGDEAGKSTLGQQKEEIMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRERLASAIL
FKVKHPQDVLPPALGATMYAIACILSYDGLPGNLATRHGSGQSSTDASGSAEGRKVGFIP
PGGFLMSLLSDVPPNAPHHQKSSNHPGGGSGHIRSSRAPAGRFNQSQQHPGRNSSGPGSS
ASQSFKRQRDAAR
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcatatcggtccatccaaacctctccctgtaccaccgcccgctcctcccacag
atcgcaccgccaccacgttgccctagaaggtttccgcccggtccaccgcagcagcacaca
aagggcaaagcgaccgcagcgggaagccgccagagagggacccgaaccggccgccgcgcc
gccccgaacgcagccgccgccgcgccgcccccgcccccgctccgcgacgacgggatgggg
cgaaaggggcccaagggggccaagaacgccgccgccctcacgaaggccgccctggccgcc
atgagcgaggagacgaccgtccgcatcacgacgctgctcgaggacttccgcgcctcagac
gcccaagtgcacacattcgaacctagtcttaccaatcaagagcgggcagcggtccatgct
atgtgtaaaaagatgggcatgatatcaaagagtaaagggtatggggaacgacgatgcctt
tctgtttacaaaacaaaaaacacgcagggggctgttaaagaagaaggccctagcaaactt
ggattttccgaagaagcaagacagattttgctagatctgtttacacactatcctcctgat
gatgctgaattgaatggtgacgctgtcaagaatcctggcgataaggctgctaaaattcta
tggaagacagatacggccttttccaggccagctatgcagaaacatgatatagcaaagaag
gtcaagatgcttacgtctaaattaaatgataccagacagttgaggaagatcggtgaaggc
agatccaaacttcctattgcatcattcaaagatcacatttcttctaccctagaaaatcac
caggtggttcttatttctggagaaacaggctgcggtaaaactacccaggttccacaatat
atcttagatcatgtgtggggcaagggtgaatcatgtaagatcatttgtactcaacctcgg
cggatatcagctatgtcagttgctgaacgaatctctgttgaaagaggagagactgttggt
gacacagttgggtacaagatacgtttggagtcgaagggagggaagaattcgtcaatcatg
ttctgcacaaatggtgttctcttgagggtgttgataggcagagtaactaacatttcaaag
aggcaacgcgcggctgatgatgtaattatggggataacacacattattgtggatgaaatc
catgaaagggataggttttccgatttcatgctggctatcttgagagatttgctgccgatg
tatcctcatcttcatttggtgctcatgagtgcaacgattgatgctgagcggttttcacaa
tatttcaatggatgcccggttattcaagtcccaggccatacctatccggtcaaaactttc
tatttggaggatgtgctttctattctgcaatctgtaggtgataatcatcttaatcctgaa
acaaatgatctgggacttgacagtgtgctaaccgatgattacaaaagctcaatggatgaa
gcaattagcatagctttagtcagtgatgaatttgatcctctcattgagcttatttctata
gagcagaacccagaaatcttcaactaccaacattcagagactggtgtgacacctttgatg
gtttttgccaggaagggtcagcttggggatgtctgtatgcttctatcatttggtgtggat
tgttctgcacgggatcatgatggaaaatctgcattagattgggcacagcaagagaatcag
gtagaggcttatgaagttattaagaaacatatggattgtagtcctgcaaaattacctgaa
gaaaacgagcagcttaagaaatacttggcaactatcaacccagaacacattgatactgtg
ctgatagaacgcttgcttagaaaaatatgtactgactccaatgaaggagctatcttagtc
ttccttcctggttgggaagatataaatcaaacacgggagaggttacttgcttcttccttt
cgggattcttcaaaatttcttgtactgtcacttcattccatgatcccatcttcagagcag
aaaaaggttttcaaacgtgcaccagcaggggttcgtaaaattattctctcaaccaacata
gcggagactgcagtaacaattgatgatgttgtatttgttatagatagtgggaggatgaaa
gagaaaagctatgatccatacaataatgtgtctacacttcatacttcttgggtatctcga
gctaatgcaagacagcgtgaaggacgtgccggtcgttgtcagccaggaacttgctatcat
ctttactctagatttcgagcagcctcattgccagaattccaaattcctgaaattaagagg
atgcctattgaagagctgtgtttgcaggtcaaactgcttgatccaaactctaaaatagca
gacttcttaaagaagaccttggatcctccagttacagagactgtaaaaaatgctattact
gtgcttcaggatcttggtgctttaactcaaaatgaacaattgacagatttgggtgaaaag
ttaggttctctcccggtccatccatccacaagcaagatgctcctgtttggtatattgatg
aactgccttgatcctgcattgacattggcatgtgcagcagactatagagatcctttcgtc
cttcctatggctccggatgagagaaaaagggctgctgcagccaaggttgagcttgcttca
ttatatggtggatatagtgaccagcttgctgttgtagcagcatttgattgttggacgtgt
gccaaagtgaaaggacaagaagctttgttttgttcaaagtacttcgtagcttcaaacacc
atgaatatgttgtctagtatgaggaaacaacttcacagtgaactaactcaaagaggattt
cttcctgctgatacatctgcctgcagcttgaatgctaaagttccaggtatcattagtgct
gtccttgtggctggcgcttacccaatggtaggaagattgctccctcctcgcaaaaatgct
agaagggcagttttggaaacagcaagtggtgccaaagttcgattacacccgcattcttcc
aactttaacttgtcatttaataaatcgtctgggaatccactaatggtatttgatgaaatc
actcgaggtgatggcggaatgtatgtaaagaactgttcagttattggatcatatccttta
cttctgcttgctacagaaatagctgttgctccacctgatgatgtaagtgatgaggatgat
gaaggttccagtggggatgaagcgggaaaaagcactctgggacaacaaaaggaagagatt
atgtcttctcccgacaacactgtttcagttgttgttgatcggtggctccgatttgatgct
actgctctggatgttgctcaaatatactgcctacgagaacgcctagcatctgctattctt
ttcaaagtgaaacatccacaggatgttctcccgcctgctcttggagcaacgatgtatgcg
attgcttgtatcctatcgtatgatggcttgcctggtaatttggcaacaagacatggttca
ggtcagagctcaacagatgctagcggatcagctgagggaaggaaagttggttttattccg
cctggcggtttcctcatgtcattgctatcggacgtaccgcccaatgcacctcatcatcag
aagtcatctaatcatccagggggtggttcagggcatattaggtcatcaagggccccggct
ggtagatttaatcagtcgcagcagcatcctggccgcaacagctctggaccagggagttca
gcatcacaatctttcaaaagacagcgggacgctgcacggtga
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integrated database retrieval system
