Triticum dicoccoides (wild emmer wheat): 119277120
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Entry
119277120 CDS
T07278
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119277120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119277120
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119277120
mRNA degradation factors
5'-3' decay
Decapping complex
119277120
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119277120
NCBI-ProteinID:
XP_037414243
LinkDB
All DBs
Position
3B:566160626..566166757
Genome browser
AA seq
808 aa
AA seq
DB search
MPGAEADGGGGAGASSSSTADSFDAGQYAFFGKEPRDGLELGCLEVDGGHGNGGGFSGPE
DAGLYRLSSVGEEIDNLSNLSDVDDLASTFAKLNRTVSGTRNPGVIGDRRSISRGSSLTV
DWTEDVEFPNYQDILENEEFQEGKRWWSSQSHSLVQQGDNKPLSRTSSYPQQPLQHRSSE
PITGPKSPPFTSFPPPGGRSPHPAQGLTRHGSIPSFGAGIQMGSPSMPLPGSPYHMVGLP
HGLPYGGSMPFGGPNMHVSNPMQNDWSNQANLFTGEHLNLLPNLLQKQISLPNSPMSSLL
FSQQQQRLAQLQPSHHQNYLNLPPHLFYHHHPPEIPGRFESATSLPSSRDKRSRSGRGKH
SLRFSQPPSDTTGSQNGESGGLKFRSKYMSSDEIESILRMQHSASHSSDPYVVDYYHQAC
MAKKGSSSRQKTNFSPTSIKDLPSKSRSSGDQHAYLQVDALGRVSFSSIRRPRSLLEVDN
PLSGEGPHDQKSSVRSLEKEPMLAARVTVEDAIGLLLEVDDIDRLLQSSQAQENSFQLRR
RRQVLLEGLAASLQLADPLGPSKSANSSGLAPKDDIVFLRIVSLPKGRKLLARYIRLIVP
GSELTRIVCMAIFRHLRFLFGGLPSDSSAAETTVSLAKTVSTCAHHMELGALSACLAAVV
CSSEQPPLRPLGSSAGDGASLIIKSVLDRATELLTDQRAVSSYTPSNRALWQASFDAFFG
LLTKYCLSKYESILQMFVMQASGSVIGSEASQATSREMPVELLRASLPHTNEQQRQMLLD
FAQRTTPASSFTPPGASGGHITSESVPG
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgctgaggccgacggcggcggcggcgccggcgcttcctcctcctccactgca
gatagtttcgacgccgggcagtacgccttctttgggaaggagccgcgcgacgggctcgag
ctaggttgcttggaggttgatggtggccatggcaatggcggtggattcagcgggccagag
gatgctggcttgtaccggctctcttcggtgggagaagagatcgacaatctaagtaacttg
tcggacgtcgatgatcttgcgagtacttttgctaagttgaaccgaaccgttagtggaaca
cggaatcctggtgttatcggtgacagacgatccatttcaagaggaagttctttaactgtt
gattggactgaggatgtggagtttcccaattatcaagatatattagaaaatgaggaattc
caggaaggtaaaagatggtggtcatcgcagtcacattctttggtgcagcaaggggacaac
aaaccgttaagtcgaacatcttcctatcctcagcagccactgcagcaccgttccagtgaa
cctatcacaggaccaaagtctcctccgtttacctcgtttccgccaccaggtggtagatca
ccacatcctgctcaaggtcttacacgtcatgggagcattccatcatttggagctgggata
cagatgggttctccgagcatgccactgccaggttccccgtatcatatggttggattacct
catggactaccatatgggggaagcatgccctttggtggtcctaatatgcatgtaagcaat
ccaatgcaaaatgactggtcaaaccaagccaacctgttcactggggagcaccttaatcta
ctgccaaacttgttacagaaacaaatatcgcttccgaatagcccaatgtcatcactgcta
ttctctcagcaacagcagagattggcacagctccaaccatcccaccatcagaattaccta
aatttaccaccccacctattctaccatcatcaccccccagagataccaggcaggtttgaa
tctgctaccagtcttccttcatcaagagacaagagatcaagatcaggaagggggaaacac
agtttacgtttttctcaaccaccatctgatactactggtagtcagaatggtgagagtggt
ggactgaagtttagatccaagtacatgtcatctgacgagattgagtctattctaagaatg
cagcactcagcaagtcacagcagtgatccttatgttgttgattattatcatcaagcttgc
atggcgaaaaagggttccagttctaggcaaaagaccaatttctccccaacatcaattaaa
gacttgccctccaagtccagatcaagtggtgaccagcatgcatatcttcaggtcgatgct
cttgggagagtttctttctcttccattcgcaggccccggtctcttcttgaagttgacaat
cctttgtcaggtgagggtcctcatgatcagaagtcttccgtgaggtccctggagaaagaa
cctatgctagcagccagggtcactgttgaagatgccattggtcttcttcttgaggtggat
gatattgacaggctcctgcagtctagccaggcacaggagaacagtttccagctgaggcga
aggcgacaagttctccttgaaggtctagccgcatcacttcagcttgctgaccctcttggg
cccagcaaatctgccaattcatctgggttagcccctaaggatgatattgtctttcttcgc
attgtttctcttcccaaaggacgtaagcttctggctcgttatatccggcttattgtccct
ggaagcgagttgaccaggattgtatgcatggctattttccgacacctgaggttcttgttt
gggggtttaccatcagattcaagtgcagcagagacaacagtttctctggcaaagactgtt
tcgacttgtgctcaccatatggagctcggtgctcttagtgcttgccttgctgcagttgtc
tgttcatctgaacaaccacctctccgtcctcttggtagctctgctggtgacggggcttct
cttattatcaagtcagtactggaccgagcaactgagttgctgactgatcagcgtgccgta
tccagctataccccgtcaaaccgagctctctggcaggcatcgtttgatgctttctttggg
cttctgacaaaatactgcctcagtaagtatgaaagtattctgcagatgtttgtgatgcag
gcatcaggctctgtgattggatctgaagcctcccaagcaactagcagggagatgccagtt
gagttgctacgtgcaagccttcctcacacaaacgagcagcaacggcagatgctgctcgat
ttcgctcagagaaccacgccagccagcagttttaccccccctggtgctagcggtggacac
atcacttctgaatcggttcctggttga
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