Triticum dicoccoides (wild emmer wheat): 119277762
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Entry
119277762 CDS
T07278
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03008
Ribosome biogenesis in eukaryotes
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119277762
09123 Folding, sorting and degradation
03018 RNA degradation
119277762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119277762
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119277762
03009 Ribosome biogenesis [BR:
tdc03009
]
119277762
03016 Transfer RNA biogenesis [BR:
tdc03016
]
119277762
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119277762
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119277762
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
RNases
119277762
Transfer RNA biogenesis [BR:
tdc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119277762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
119277762
NCBI-ProteinID:
XP_037414978
LinkDB
All DBs
Position
3B:complement(671924278..671933263)
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AA seq
1047 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEKEPVEIEGVQVPVDTSKPNPNGLEFDNLYLDMNSLLL
PQPSPTTFAEVFQCMFDYIDRLFIMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAA
DAAEEEEKLREEFEREGRKLPPKLQSQTCDSNVITPGTEFMAVLSVALQYYIHRRLNYDP
GWKQIKVILSDANVPGEGEHKIMSYIRGNRNLPGFIPNTRHCLYGLDADLIMLALATHEV
HFSILREVVFTPGQQDKCFLCGQVGHLAAKCEGKAKRKAGEFDEKGDEIVPKKPYQFLNI
WTLREYLEYEFRMPNPAFETDIERIIDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAV
YKKEFPNMGGYLTDACTPDLNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIKRDKAQAK
RGDDLDPHVRGDLIVPVARFQGCRLASGAVASPYEHNGRSMEKGSQAKKARVSSSDSSLS
AAVVEAEISLEAQARENKEDLKSMLKVTLRDKSDLFNSENPEEDKIKLGEPGWRERYYED
KFGARTPGQIEEIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKGLGQL
DITFELGSPFKPFDQLMGVFPAASSHALPVQYRQLMTDPSSPIIDFYPIDFEVDMNGKRF
SWQGIAKLPFIDEARLLSEIKKVEHTLTPEEARRNSTMYNMLFVNVAHSISPYIYSLSSK
FGHLPDNERNEIKEELNPEASGGMNGYISLCGGDPSPPVFRSPVDGLEDIMDNQVICSIY
KLPDPRKHIARPPPGVIIPKKIVEAGDLKPPPVLWHEDNGRRPYDNNRKHCDNSSRQNPA
GSIRGRQLGEAAHRLVANSLNVCGGGQYPPARPYQTIMNGMHYPNGMPPRMEQPAGRSGW
HVPSDNLPNGQAPAYAQRSGHQYTRDNRGRQQPYARDSHSDSRGAGRHPSGYHQNSSNAY
SSHTAPPSSGFGRYGQPPSYAGGYAGGVYQPAPYAGAQQWQQQPPHSSYSGGGAPAARPN
SRPQQSQNRYSNLDRTSNRRPPGQGRY
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcccggcgttctaccgctggctggctgagaagtacccgatggtggtggtggac
gtggtggagaaggagcccgtggagatcgagggcgtccaggtccccgtcgacacctccaag
cccaaccccaacggcctcgagttcgacaacctctacctcgacatgaactctcttctactg
ccacagccttcgccgacaacattcgctgaggttttccagtgcatgtttgattacatagat
aggctctttatcatggttcgccctcggaagcttttgtacatggccattgatggtgtggct
cctcgtgctaagatgaaccagcagcgctctagacgattcagagctgcaaaagatgctgct
gatgcggctgaagaagaagaaaaactgcgtgaagagtttgagagggaaggaagaaagctt
cctccaaaattgcaatcacaaacatgtgattctaatgttattactcccggcacggagttt
atggctgttctatcagttgctttgcagtactacatccaccgcagattgaattacgatcct
ggatggaaacaaattaaagtcattctttctgatgccaatgttcctggtgaaggggaacat
aaaatcatgtcctacattcgtggcaataggaaccttcctggatttatcccaaatacccga
cattgcctgtacggcctggatgcagatctaatcatgttagctctagcaacacacgaagtg
cacttctccatactgagagaggtggttttcacacctggacagcaggacaaatgcttcttg
tgtggtcaagttggacatctagcagcaaagtgtgaaggaaaggcaaaacgtaaagctggg
gagtttgatgagaagggtgatgaaatagtacctaagaaaccttaccagttcttgaatata
tggaccctacgagagtacctagaatacgagttccgaatgccaaatccagctttcgagact
gatattgaacgcatcattgatgatttcatcttcatgtgcttttttgttggcaatgatttt
cttccacacatgccgacactagagattcgtgagggagctattaatttgttaatggctgta
tacaagaaggaatttcctaatatgggtggctatttaactgacgcttgcacgcctgatctg
aatagagtcgaacacttcattcaagcagttggttcatacgaggataaaatatttcagaaa
agagctcgtttgcaccagcgtcaagctgaaagaataaaacgtgataaagcccaagcaaag
cgaggtgatgatctggatccccatgtaaggggtgatcttattgtgcctgttgcacgtttc
caaggatgtcgccttgcctctggggctgtggcttcaccatatgaacataatggacgtagc
atggaaaagggcagtcaagctaagaaagcacgtgtatcatcttcagattccagcctttct
gctgctgttgttgaagctgaaattagccttgaagcacaggcacgtgaaaacaaagaagac
ctgaagtcaatgcttaaagttacacttcgtgataaatcagatctttttaattccgaaaat
cctgaggaggacaagataaagcttggagaaccaggatggagagaaaggtattatgaagac
aagtttggggcaagaacacctgggcaaattgaagaaatacgtagagatgttgttctcaaa
tatactgaaggtttgtgttgggtaatgcactactattatgaaggtgtctgctcatggcaa
tggttttacccttatcactatgccccttttgcttcggatttaaaaggtttaggccagctt
gatataacttttgaacttgggtcaccattcaaacctttcgatcagcttatgggagtattc
ccagcggcgagctcacatgcactccctgtacagtatcggcaattgatgaccgatcctagt
tcgccaataattgacttttatccgattgatttcgaagtagatatgaatggaaagaggttt
tcttggcaggggatagctaaactgcccttcattgatgaagctaggttgctgtctgagatt
aaaaaagtcgagcatactttgacgcctgaagaagcaaggcgaaacagtacaatgtacaat
atgctttttgtgaatgtcgcacactcaatttcgccttatatctactctctcagcagcaaa
ttcggacatctgcctgataacgagcgaaatgaaattaaagaggaactcaatcctgaagct
agtggaggaatgaatggttacatctcactttgtggtggggatccaagtccgcctgtcttt
agatctcctgtggatggactggaggatattatggacaatcaagtgatatgctcaatttac
aagcttccagaccctcgtaagcacatagcacgtccacctcctggtgttatcatacccaag
aagattgttgaagctggtgacctgaaaccaccgcctgtgctgtggcatgaagacaatggc
aggaggccttatgacaataacaggaagcattgtgataacagcagcaggcaaaaccctgca
ggatcgatacggggccgccaactaggggaggctgcacaccgactagttgcaaacagcttg
aatgtttgcggtggcggacaataccccccggctaggccatatcaaactataatgaatggt
atgcattatccaaacggaatgccaccaaggatggagcagcctgctggacgttctggttgg
catgttcctagtgataatctacccaatggtcaggcaccagcctatgcgcagcgatcaggt
catcagtatacaagagataatcgtggaaggcaacaaccatatgcgagagacagccacagc
gattcaagaggagcaggccggcatccatctggataccatcagaatagtagcaacgcatat
tcatcacatactgctcctccgtcatcgggttttggacgatatgggcaacccccctcgtat
gctgggggctatgctggtggggtctaccagcctgcaccatatgcaggagcccaacagtgg
cagcagcaaccacctcatagttcctattctggaggtggggcgcctgctgcaagacctaat
tcacgaccgcagcagtcacagaaccgctacagcaacttagataggacttcaaacaggaga
ccaccaggtcagggccgctactag
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