Triticum dicoccoides (wild emmer wheat): 119280238
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Entry
119280238 CDS
T07278
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc00040
Pentose and glucuronate interconversions
tdc01100
Metabolic pathways
Module
tdc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
119280238
Enzymes [BR:
tdc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
119280238
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Motif
Pfam:
Glyco_hydro_28
Beta_helix
Motif
Other DBs
NCBI-GeneID:
119280238
NCBI-ProteinID:
XP_037417053
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Position
3B:complement(838398759..838424446)
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AA seq
417 aa
AA seq
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MEGVVAASRDLGVGTGIQLCFSTPDIAVLDGGLPAAGHFAGQAALLLRAFRSDSVLDSAG
AFLAAWGAACNDTGRCGSRPVLWVPAGRFLISQAYFKGPCRSAGVDVAIDNNSTVFAPST
VDNRAWIMFHHADGLAIRGGTLDGQGQEYWACKKAGRCTAGQGPRTLDISQSKGVSVKQL
TLLDSKEFHMSIFDCSGVTVQGIRIIAPSNSPNTDGIQVSHSRHVSILNTTIGTGDDCIS
LGPGTSDMLIRDIKCGPGHGISIGSLGWQDSEEGVRNVTVDRAVLKGTTNGLRIKTWAMP
NSGFVKNVSFSRVTMNRVANPILVDQNYCPRKGDCPGNSSRVQISDLSYTDIKGSSATPV
AVKFNCSGTNPCSGIKLRNIRLRYRHQRPAQAKCQNAGGSASGEMPNLHVKSDGYNL
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggagggagtggtggcggcgagcagagatctcggcgtcggaactggaatccaactctgc
ttctctactccagatattgctgtgctcgacggtggacttcctgctgccggccacttcgcc
ggccaggcggcactgcttctccgcgcattcaggagcgactcggtattggactcggcgggg
gcgttcctggccgcgtggggtgcggcatgcaatgacacggggcgctgcggctcccggccg
gtgctatgggtgccggcaggcaggttcctgatcagccaggcctacttcaaggggccctgc
cggagcgccggcgtggacgtggccattgacaacaatagcaccgtcttcgcgccgtcgaca
gtggacaacagggcgtggatcatgttccaccatgccgacggcctggcaatccgtggtggg
acgctggacgggcaagggcaggagtactgggcatgcaagaaggccggtaggtgtaccgcc
gggcaggggcccaggacacttgacattagccaatccaagggcgtgagcgtgaagcagctg
acgctgctcgacagcaaggaattccacatgtccatcttcgactgcagcggcgtgacggtc
caaggcatccggatcatcgcgccgtctaacagccccaacaccgacggcatccaggtcagc
cactcccggcacgtgagcatcctcaacaccaccatcggcaccggcgacgactgcatctcc
ttggggcccggcacctcggacatgctcatcagggacatcaagtgcggtccaggccacggc
atcagcatcgggagcctgggatggcaggacagtgaggagggggtgagaaacgtgaccgtg
gacagggcggtgctgaagggcacgaccaacggcctgcggatcaagacgtgggcgatgccc
aactccggcttcgtcaagaacgtctccttctcgcgggtcaccatgaaccgcgtggccaac
cccatcctcgtcgaccagaactactgcccccgcaagggcgactgcccgggcaatagctcg
agggtgcagatcagcgacctgtcgtacacggacatcaagggctcgtcggcgacgcccgtg
gcggtgaagttcaactgcagtggcaccaacccctgcagcgggatcaagctcaggaacatc
aggctgaggtaccggcaccagcggccagcgcaggccaagtgccaaaatgccggcgggtcc
gcgtccggagagatgccaaatcttcatgtaaaatccgatggttataacttgtga
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