Triticum dicoccoides (wild emmer wheat): 119281018
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Entry
119281018 CDS
T07278
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc00040
Pentose and glucuronate interconversions
tdc01100
Metabolic pathways
Module
tdc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
119281018
Enzymes [BR:
tdc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
119281018
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
119281018
NCBI-ProteinID:
XP_037417567
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Position
3B:complement(152664039..152666819)
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AA seq
412 aa
AA seq
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MRVAAAGRTSLFLVLPLLLLLVVSATVRSAAAAATKVWKGEGTRYSVMAFHAAGDGVTDD
TKAFEETWDSACRDSGGANVYVPVGRTFLLRDATFNGPCKSPITMQVDGDIVAPSTLWQL
KSSSVLTFHEVDNLTVDGSGQIDGRGAPWWDCHNHKKCSVRPMLVSFSFCNGLRVTNIRL
KDSALKHISVYRCSQALVHNVSISAPCDSPNTDGITIGASDHVRVSSSSIKSGDDCVSII
TETTDVNVTDITCGPGHGISVGSLGGAGEGPAMVERITVSNCNFFNTTNGVRIKSWQGGQ
GKASGFIFRDLNMTEVQHPIGIDQFYCPHGNCPERQGGVAITDARFINIHGTSSEREAIK
IMCSNSVPCHDIYLDNVDLSWCKHTAPPKAKIMNAHGSVAGKVKPQVQFLGR
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgagggttgcagcagcaggacgcacctccttgttcctcgtcctgccgctgctgctgctt
cttgtggtatcggccacagttcgttctgcggcggcggcggcgaccaaggtgtggaaaggg
gaagggactcgatacagcgtcatggctttccatgccgctggggacggcgtgacggatgat
accaaggcgttcgaggagacatgggactctgcgtgcagggacagcggcggagccaacgtg
tacgtccctgtgggaaggaccttcttgctgcgcgacgccactttcaacgggccctgcaag
tcacccatcacgatgcaggtggacggggacatcgtggcgccaagcaccctctggcagcta
aaatcgtcaagcgtgctgaccttccacgaggtcgacaacctgacggtggacggcagcggc
cagatcgacggccgaggcgccccgtggtgggattgccacaaccacaagaaatgcagtgtc
cggccaatgctggtgtcattctcgttctgcaacggtctacgggtgaccaacatacgcctc
aaggacagcgccctcaagcacatcagcgtgtacaggtgcagccaggcgctggtgcacaac
gtctccatctccgcgccctgcgacagccctaacacggacgggatcaccattggggcctcc
gaccatgtccgcgtctcctcttcctccatcaagtccggtgatgattgtgtgtcgattata
acggaaaccaccgatgtcaacgtcactgacatcacgtgtgggcccggtcatggcatcagt
gtgggaagccttggaggtgctggtgaaggcccagcgatggtggagaggattacagtatcc
aactgcaacttctttaacacgacgaacggtgtcaggatcaaatcttggcagggcgggcaa
ggcaaagcgagcggattcattttcagggacctcaacatgactgaagtccaacatcctatc
ggcatcgaccagttctattgcccacatggaaactgtccagaacggcaaggtggtgtggcc
ataacggacgcgaggttcatcaacatccatgggacgtcctccgagcgagaggctatcaag
atcatgtgcagcaatagcgtgccgtgccacgacatctatctcgataatgtcgacctatca
tggtgtaaacacactgctccaccaaaagccaagattatgaatgcccatgggagcgtcgcg
ggcaaggtgaagccacaagtgcagttcttgggccgttga
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