KEGG   Triticum dicoccoides (wild emmer wheat): 119281126
Entry
119281126         CDS       T07278                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    119281126
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119281126
   03009 Ribosome biogenesis [BR:tdc03009]
    119281126
   04131 Membrane trafficking [BR:tdc04131]
    119281126
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tdc04147]
    119281126
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     119281126
Ribosome biogenesis [BR:tdc03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    119281126
Membrane trafficking [BR:tdc04131]
 SNARE
  SNARE associated proteins
   Others
    119281126
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    119281126
Exosome [BR:tdc04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   119281126
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_2 AAA_16 AAA_33 AAA_5 CDC48_2 AAA_14 AAA_22 TIP49 NPHP3_N RNA_helicase AAA_17 nSTAND3 Mg_chelatase AAA_28 Parvo_NS1 AAA_18 ABC_tran ATPase_2 IstB_IS21 AAA_7 NACHT NB-ARC Vps4_C Viral_helicase1 ResIII AAA_24 TsaE Zeta_toxin DUF815 Sigma54_activ_2 Rad17 Zot Molydop_binding
Other DBs
NCBI-GeneID: 119281126
NCBI-ProteinID: XP_037417643
LinkDB
Position
3B:complement(187923748..187926120)
AA seq 790 aa
MASTAASKKAANRLVVEEAATNDDNSVCNLHPATMEKLSIFQGDIVLLKGKRRHNTVCMA
LPDDTCEGHKVRINKVARSNLRVRIADVVSVHLCHDAKFGKRVHILPLDDTVEGITGNLF
DAYLKPYFVDAFRPVHKGDLFLVRGGMRSVEFKVMEIDPAADYCVVAPDTEIFCEGEPVK
REDEERLDDVGYDDVGGMGKPLTLIWELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP
NREKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEVLRIHTKNMKLDEDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVID
LEDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETIVEVPNVTWNDIGGLDGVKRELQE
TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFNKARQSAPCVLFFDELDSIATQRGGRVGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVD
LGALARFTAGFSGADITEICQRACKYAIREDIEKDMERQRMGKDTMEVDGGQEDEVAQIK
ASHFEESMRYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFPAQPQAAEAAVHTSAAAA
ADEDEDDLYK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atggcgagcacggctgcgtcgaagaaggcggcgaaccggctggtggtggaggaggccgcc
accaacgacgacaactccgtgtgcaacctccacccggccacaatggagaagctctccata
ttccagggcgacatcgtgctgctcaagggcaaacgccgccacaatacggtctgcatggca
ctgcccgacgacacctgcgaggggcacaaggtcaggatcaacaaggtggcccgctccaac
ctgcgcgtgcgcatcgccgacgtcgtgtccgtgcacctgtgccacgacgccaagttcggc
aagcgcgtgcacatcctccctctggacgacaccgtcgagggcatcacgggcaacctcttc
gacgcctacctcaagccctacttcgtggacgccttccgcccggtccacaagggcgacctc
ttcctcgtgcgcggcggcatgcggagcgtcgagttcaaggtcatggagatcgaccccgcg
gcggactactgcgtcgtggcgcccgacacggagatattctgcgagggcgagcccgtcaag
cgggaggacgaggagaggctggacgatgtcggctacgacgacgtgggtggcatggggaaa
ccgttgactctgatctgggagctcgtcgagttgccactcaggcatccgcagcttttcaag
tccattggcgtcaagcctcccaagggcatcctcctctacggccctcccgggtcgggcaag
actctgatcgcccgtgcggtggctaacgagaccggggccttcttcttcctgatcaacggc
ccggagataatgtccaagatggccggagagagcgagagcaacctgaggaaggccttcgag
gaggccgagaagaacgcgccctccatcatcttcatcgacgagatcgactccatcgctcct
aacagggagaagactcatggcgaggttgagaggcgcatcgtctcccagctgctgactctg
atggacggcatgaaagcccgcgcgcacgtcattgtcatgggcgccacaaaccgtcccaac
agcatcgaccccgccttgaggcgcttcgggaggttcgatcgtgagatcgacattggcgtg
ccggacgaggtcgggcgtctcgaagtgctccgcatccataccaagaacatgaagctggac
gaggacgtcaaccttgaggtggttgccaaggatacgcacggctacgtcggcgccgacttg
gccgcgctctgcactgaggcggcgctgcagtgcatcagggagaagatggacgtgatcgac
ttagaggacgataccattgatgccgagatcttgaactccatggccgtcaccaatgaccac
cttaagacggctctcgtcggcaccaacccgtctgcactacgtgagaccattgtcgaggtg
cccaacgtcacctggaatgatatcggcggcctcgacggcgtcaagagggagctgcaagag
accgttcagtacccggtggagcacccggagaaattcgagaagttcggcatgtcaccgtcc
aagggcgtcctcttctacgggccaccgggatgtggcaagaccttgttggcgaaggcgatc
gccaacgagtgccaggccaacttcatcagcatcaaggggccagagttgctcaccatgtgg
ttcggcgagagcgaggccaacgtgcgcgagatcttcaacaaggcgcgtcagtctgcgccg
tgcgtgctcttcttcgacgagctggactccatcgctacccaaaggggcggcagagtgggc
gacgccggtggcgcggcggacagggtcctgaaccagctgctcactgagatggacggcatg
aacgccaagaagactgtcttcatcatcggcgctaccaataggccggacataattgactcg
gcgttgctccgtcccggccgcctggaccagcttatctacatccccttgccggacgaggcc
tcgcggcaccagatcttcaaggcctgcctccggaagtctcccgtggccaaggacgtcgac
ctcggtgcactcgctaggttcaccgccggcttcagcggcgccgatatcacagagatctgc
cagagggcgtgtaagtacgccatcagagaagacattgaaaaggacatggagaggcagagg
atggggaaagacaccatggaggtggacggcggtcaggaagacgaggtggctcagattaag
gcgtctcacttcgaggagtcgatgaggtacgcgaggcggagcgtgagcgatgctgacatc
aggaagtaccaggcgttcgcgcagacgctgcaacagtctagggggttcggcaccgagttc
cgcttcccagcgcagccacaggcggcagaagctgctgtccacacctccgcggcagcagct
gctgatgaggatgaagacgatctttacaagtga

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