Triticum dicoccoides (wild emmer wheat): 119284255
Help
Entry
119284255 CDS
T07278
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119284255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119284255
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119284255
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119284255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
119284255
NCBI-ProteinID:
XP_037419354
LinkDB
All DBs
Position
1A:512174338..512182687
Genome browser
AA seq
612 aa
AA seq
DB search
MSGSLNSNIGGDSTGRPFTSTFSGQSGSFPNFHHSGLHNIHGNLNLASLSPRNASLSGIP
SPGVQQPGGNISGSRFPSNNLPVSMSQISHGHSGISNRGGMNVGGNAVFSSSMNAIGGSA
QGLSSSMANVGNRNSAPGLTASSVLGNLGPRITNSAGNIVGGSSIGRSISSAGMSMPGIA
SRINSSGNSGSGALNIPSNRLSSMHQASPQFMNILGSSYPAPGGTLSQNQVQAGNNSFSS
SGMLHDGNSGDNSPFDINDFPQLTGRPNSAGGGQGQYGSLRKQGVSVNAIVQQNQEFSIQ
NEDFPALPGYKGNSSDYGMDLHHKDHLHENANIMQGQHFPMGRSSGFNLGGSYPARQQQQ
QSTTSVQNGLDNIGLRPINSPSPSSNSGSYEQLIQQYHQPQTQNSLRSQTSSGQQSSKDQ
SQKSAQGKETVPDPYSLLGLLNLIKSKEPGPTALALGLDLTTLGLNLNSPDCLWKTFGSP
WSNEPAKGEPDYQIPACYSAEQPPPLQPFNFPKFHPLTLFYIFYSMPKDVAQLYAANELY
NKGWFYHREYRVWLTRASNVAPLVKTPLYERGSYICFDPSLWDTIQKDNFVLQYESVEKR
PVLPSASQNVRL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcactgaattcaaatattggtggggattcaacaggaaggccattcacatca
accttttctggtcagtctggatcatttcctaatttccatcactctggcttgcataatatc
cacggaaatctcaatcttgcatcactatcgccaaggaatgcttcattgtcaggtattcca
tccccaggtgttcaacaacctgggggcaatatttctggtagccggtttccctcaaataac
cttccagtgtccatgtctcagatttctcatggccattctgggatcagcaacagaggaggt
atgaatgttggggggaatgctgtatttagtagtagcatgaatgctattggtggttcagca
caaggtttatcctcaagcatggctaatgttggtaatcgaaattctgctcctgggttgaca
gcttcttcagttttggggaacttaggcccacggataacaaattctgcgggcaatatagtg
ggtggcagcagtattggcagaagcataagctcagcaggaatgtccatgcctggtattgca
tcccgtatcaattcgagcggcaactctggaagtggggctcttaatatcccatccaatcga
ctgagtagtatgcatcaagcgtcaccacagttcatgaacattcttgggagttcttatcca
gcacctggaggaacgctatctcagaaccaagttcaggcaggaaacaattcttttagttct
tcaggaatgctacatgatggaaactctggtgacaattctccgtttgacataaatgatttt
ccccagttaactgggcgtcctaattctgctggaggtggtcaagggcaatatgggtcactg
cgaaaacaaggagtaagtgtaaatgccattgtgcaacaaaaccaggagttcagcattcag
aatgaagattttccagctttaccaggatataaaggcaattcgtcagattatggtatggat
ttgcatcacaaggaccaccttcatgagaatgcaaatattatgcagggacaacattttcct
atgggtagatcatctggctttaatttgggaggtagctatccagcccgccaacaacagcag
cagagcactacttcggttcaaaatggtcttgataatattgggctaaggccgataaattct
ccaagtccgtcttctaattcggggtcttacgagcaactcatccagcaataccatcaaccg
cagactcagaattcacttaggtcgcagacgtcttcgggccaacagtcatctaaggatcag
agtcaaaagtctgctcagggaaaagaaactgtgccagacccatatagtttacttggattg
ttgaacttaataaaatcaaaagagcctggaccaacagctcttgctttagggcttgattta
actacactagggctgaatttgaactctccagattgtctttggaagacatttggctctcca
tggtcaaacgagccagctaaaggagaacctgattatcagatccctgcttgttattctgct
gagcaacctccaccactgcagccattcaattttccaaagtttcaccccttgacactattc
tacatcttctacagtatgccgaaggatgttgctcagttatatgccgcgaatgaactatat
aacaaagggtggttttaccacagagagtatcgtgtgtggctcacacgagcttcaaatgtg
gcgcctcttgtgaaaacaccactgtatgaacgaggatcctacatttgttttgatcccagc
ctgtgggatacaattcagaaggacaactttgtgctccaatatgaatctgtagagaagaga
cctgtcctcccttccgccagccaaaatgttagattataa
DBGET
integrated database retrieval system
