Triticum dicoccoides (wild emmer wheat): 119284711
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Entry
119284711 CDS
T07278
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119284711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119284711
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
119284711
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
119284711
NCBI-ProteinID:
XP_037419765
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Position
4A:complement(25208490..25214179)
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AA seq
661 aa
AA seq
DB search
MDGSKGPSDGDAAEEAGDGNKDRTPGASDAVLAAGPFRTAASDGRAPWAAPGAKPKVVYH
DPSIPRPQDVYLIRVNNCNSPFDHVWLERSEDGTRPIHPLEKLPVEQFIDRNVPESEPVR
PADVDDTPFTLVEDLKGLTELVNKLKDVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFI
IDTLKLRIYIGSYLKELFKDPTKRKVMHGADRDIMWLQRDFRVYVCNLFDTGQASRVLQM
ERNSLEHLLHHFCGVTANKIYQNADWRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRE
STCENDLLLEVQKRSNDICLQLYEKELLTDKSYLHIYGLQEHELAAAQLAVVSALHQWRD
YIAREQDESTGYVLPNKALIEIAKKMPTTTADLRRIVKTKYPCVEDNFDLILDIIWNATE
NSGAFEAIAEQLKKVRLGELDLKSILDTGEVIEMAPSDADNVRISFDPADQYSLAPSSTA
NIRVTSNSRDSFMTDATLTGSIWLHDKTSTIPSSENRTSWGLSGLTRQSNKEVMSNNKQE
TQAPVQELKRPSPFGALVGNSTSGRQTDYFGGFSNEQAKSDVDQIQSSAYYYPQFSDYSS
LAGWSHHEPERTQASGFMSGCYYGHGYQSINQSSTGTGQPAARNNGGGLKKQQQPPPHSG
N
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacgggtccaagggcccgagcgacggggacgcggcggaggaggcgggggacgggaac
aaggacaggacgcccggcgcctccgacgccgttctcgccgccgggccgttcaggaccgcc
gccagcgacggcagggcgccctgggcggcgccgggggccaagcccaaggtggtctaccac
gatcccagcatcccgcggccgcaggacgtgtacctcatcagggtcaacaactgcaactcg
cccttcgatcacgtctggctggagcgcagcgaggacggcacccgccctatccaccccttg
gaaaaactacccgtggaacagtttattgacagaaatgttcctgaaagtgaaccagtaagg
ccagctgatgtagacgataccccgtttacgctagtagaagacctgaaaggattgacagag
ttagttaacaagttgaaggatgtaaatgaatttgctgtcgatttggagcacaatcaatat
aggtcatttcagggtttgacctgcttgatgcagatttcaacaagaacagaggacttcatt
atcgacacccttaagctacgcatatacatcggttcttacttgaaagaacttttcaaagat
ccaaccaagagaaaggtaatgcatggggcagatcgtgatataatgtggctccagcgggac
ttccgagtatatgtgtgcaatctttttgacacaggacaggcttcaagggttttacagatg
gaacgaaacagcctagaacacctattacatcatttctgtggagtcacagcgaataaaata
tatcaaaatgcagattggaggtcaaggccactctctgatgaaatgatcaagtatgcgaga
gaagatacacattatctgttgtatatatatgacttgatgagacttagactacaaagggag
tccacatgtgaaaacgatcttcttttagaggttcaaaagcgcagtaatgatatttgctta
cagttgtatgaaaaggagctgctgacagataaatcttacctccacatatacgggttgcag
gaacatgaattggccgcagctcagctggctgttgtttctgctctacatcagtggagagat
tatatagctcgtgaacaagatgagagcactggttatgtattgccaaacaaggctttgatt
gagatagcaaagaagatgcctacaaccactgcagatttgcgaagaatcgtgaaaacaaaa
tatccatgtgttgaggataattttgacctaatcttggacatcatatggaatgcaactgaa
aattctggtgcctttgaagcaatagctgagcaactaaagaaagtacgacttggtgagtta
gacttgaaaagtatactggacactggtgaagttatcgaaatggctccttcggatgctgat
aatgttaggatcagttttgatccagctgatcaatattctttagctccttcatcaactgca
aatatcagggttacttctaacagtagggatagttttatgactgatgcaactttgactggt
agcatctggctacacgacaaaacctcaaccataccatcatcagaaaataggacgtcttgg
ggcttatcaggcctgactagacaatcaaacaaggaagtgatgagcaataataagcaggag
acacaggctcctgttcaagaactgaagagaccttcgccttttggagctctggtaggcaat
tcaacatctggaagacagacagattactttggaggattttcaaatgagcaggctaaaagc
gacgttgatcagattcagtcttcagcttattactacccccagttctcagactacagcagt
ttagctggatggagccatcatgaacccgaacgcacacaggcctctgggttcatgtctggt
tgctattacgggcatggctaccagtcgataaaccaaagcagtacaggaacaggtcagccc
gccgctagaaataatggagggggtttgaagaagcagcaacaacctccccctcattcgggt
aactaa
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