KEGG   Triticum dicoccoides (wild emmer wheat): 119285800
Entry
119285800         CDS       T07278                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119285800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tdc03041]
    119285800
Spliceosome [BR:tdc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    119285800
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 Beta-prop_TEP1_C NBCH_WD40 PRP4 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_SCAP Beta-prop_NWD2_C WD40_like Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 119285800
NCBI-ProteinID: XP_037421029
LinkDB
Position
4A:290828528..290833880
AA seq 509 aa
MSMEIPRPLPPAITPPMAPHPVHPPIAPIPIPVTPSTSAAADDDEVDYEVSDDHRAARER
HERAVQELLQRRRAYAMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRLRALMVRLEA
DGQFDRLLRAQEDEQGAPGDDDDMEQIQYPFFTEGTNQLLQARVDIAMYSLPRAKARVDS
AKRRLAGPDEDPEAEAALVVKQAGDFVLECSEIGDDRPLTGCSFSRDASMLATSSWSGII
KVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADKTAKLWNRDGSLLMSFDGHLD
RLARVAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFHPDGSLAASCG
LDANARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQMVYS
IPAHKSLISHVKFEPQEGYYLATSSYDSKAALWSTRDYKPIKSLAGHESKVTSLDISGDG
QHIVTVSHDRTIKIWSCRGTARDNEMELD
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtccatggagatccccaggccgctcccccctgccatcacccctcccatggctccccac
cccgtccacccgcccatcgctccgatccccatccccgtcacaccctccacatccgccgct
gccgacgatgacgaggtcgactacgaggtctccgacgaccaccgcgccgcgcgggagcgc
cacgagcgcgccgtacaggagctactgcagcgccgacgcgcctacgccatggccgtgccc
accaacgactccgccgtgcgcgcgcgcctccgccgtctcggcgagcccatcacgctcttc
ggcgagcgcgagatggagcgccgcgaccgcctacgcgcactcatggtccgcctcgaggcc
gacggccagttcgaccgcctcctccgcgcgcaggaggacgagcagggagccccgggcgac
gacgacgacatggagcagatccagtaccctttcttcaccgaggggaccaaccaactgctt
caggcgcgcgttgatatagctatgtactcgctgccccgcgctaaggccagggtcgacagt
gccaaacgccgcctggctggccccgacgaggaccccgaggcagaggccgcccttgttgtc
aagcaggcgggggacttcgtgcttgagtgcagcgagattggagatgaccgcccgctcacc
ggttgctccttctcccgcgatgcctcaatgctcgccacaagctcctggagcgggatcatc
aaagtatggagcatgccacagataactaaaattgcaaccctgaaaggtcatacagaacgt
gcaactgatgttgccttctctccagttgataactgcttagcgacagcctcagctgataaa
actgccaaattatggaacagagatgggtcactcctaatgtcttttgatggtcacctggac
cgtcttgctcgcgttgcttttcatccatctggaaagtaccttggtacagctagctttgac
aagacctggagattgtgggacatcaatactggaactgaacttctactccaagagggacat
agcagaagtgtatatggtgttagctttcatccagatggttctttagctgcatcttgtggg
cttgatgcgaatgctcgagtttgggatctaaggtcaggaagattgtactgtaccctcatt
ggacatgtgaaacctgtcctaggagtcagcttctcccctaatggtcatctagttgcaact
gcaagtgaagacaatttctgtcgaatatgggatttgaggaccagacaaatggtatactct
ataccggcacataagagtctcatctcgcacgtgaaatttgaaccccaggagggttattat
ttagcgacatcttcctatgacagtaaagcagcgctatggtcaactcgggattacaaacca
attaaaagcttggcaggccatgagtcaaaggttactagtctggatattagtggagatgga
caacacattgtgactgtttcacatgatagaactataaagatctggtcatgcagaggcaca
gcgcgggataacgagatggagttggattaa

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