KEGG   Triticum dicoccoides (wild emmer wheat): 119286505
Entry
119286505         CDS       T07278                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119286505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119286505
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     119286505
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     119286505
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 119286505
NCBI-ProteinID: XP_037421782
LinkDB
Position
1A:complement(533757405..533764004)
AA seq 817 aa
MRGLRADAGGGGASSSSSASTAESSRFDSGQYSFFGKAPLEGLELGGSLADDGGLDGGYG
GGGFGGHDDGASYQLSPVGEEIDCMSNLSEIDDLASTFAKLNRSISGTRNPGVIGDRRSI
SRESSLTTTDWVQEAEFSNWVDHDILGSDELQDSKQLCPQPQYLPQFGESKPLSRTSSYP
LEPLQHRSSEPILGHRSPSFTSYPPPGGGELSYPAQGLTRHSSIPSPGAGYQMGSPSSSL
TGSPYNMPGLPHGLQLGRSMSYTSADLYANNFLQNEWPSQAGSHAFEHLNLQPSLLQQQL
SFPSSSMSSLLFSQQQQQQQRLSLVQPPHHNYLNMQPHLYHHHSPEIIGRFDHIPSVPSP
RDKRSRSGRGKHSMRFSQQQSDTAGQNVDTGGTKFRSKYMSSEEIDTILRMQHSGSHSSD
PYVDDYYHQACIAKRSVNSQQKVNFSPASIKDSHSKSRSGGDQHSYLKVDSLGRVSFSSI
RRPRPLLEVDIPASGDGHKSSTRPLEKEPMLAARITVEDGICLLLDVNDIDRVLQSSQAQ
DSSFQLRRRRQVLLEGLATSLELVDPFGPNKPGNSSGLAPTDDLIFLRIVSLPKGRKLLA
RYLRLLAPGSELTRIVCMAIFRHLRSLFGGLPSDSGAAETTVSLAKTVSSCVHHMELSAL
SACLAAVVCSSQQPPLRPLGSSAGDGAALIIKSVLDRATELLADPHSAANYSRSTRSLWQ
ASFDAFFGLLTKYCDSKYGSILQRFSMQGSNSMAGPEASKAVSREMPVELLRASLPHTSE
EQRQMLLDFARKSMPVIGYNHSGASGGHSTTSEPVPG
NT seq 2454 nt   +upstreamnt  +downstreamnt
atgaggggcctccgggcggacgccggcggcggcggcgcatcctcctcctcgtcggcctcc
accgcagagagctcgcgcttcgactcggggcagtattccttcttcggcaaggcgccgctg
gaggggctggagctcggcggcagcctggcggatgacgggggcctggacggcggctatggc
ggcggcgggttcggtgggcacgatgacggggcttcttaccagctgtctcctgtgggggaa
gagattgattgcatgagtaacttgtctgaaattgatgatcttgcaagcacgtttgcaaag
ttgaaccgaagtattagcggaacaaggaatcctggtgttattggtgatagacgatcgatt
tccagggaaagttctttgactaccaccgactgggttcaggaagcagagttctcgaattgg
gtagatcatgatatactgggcagcgatgaattgcaggacagcaaacaattgtgtccacag
ccacagtatttgcctcagtttggagagtcgaagccattgagccgaacatcatcctatccc
ctggagccactacaacaccgctccagtgaacctattctgggacatagatctccttcattt
acatcctatcctccaccaggtggtggtgaattatcttatcctgcacaaggtcttacgcgg
cactcgagcattccatcaccaggtgctggttaccaaatgggttctccaagttcgtcgctt
actggttctccatataacatgcctggtctacctcatggactgcaattggggcgaagcatg
tcttacacttctgcagatctatacgcgaacaacttcctacaaaatgaatggccaagtcaa
gctggttcgcatgcttttgagcatcttaatctacagcccagtttattgcagcaacaacta
tcttttccgagtagttcaatgtcttcgttgctattttctcagcagcaacagcagcagcag
aggttgtcactagttcagccgcctcatcacaattacctaaacatgcagcctcacttgtat
caccatcattccccagagataataggcaggtttgatcatattcctagtgtgccttcacca
agggacaagagatcaaggtcaggaagaggaaaacacagtatgcgcttttctcaacaacaa
tctgatacagctggccagaatgttgacactggaggaacaaaattcagatcaaagtatatg
tcatctgaagagattgatactattttaagaatgcagcactctggtagtcacagcagtgat
ccttacgtcgatgactactaccaccaagcttgtatagccaaaagatctgtcaactctcag
cagaaggtgaatttctcccccgcatcaataaaagactcccactcaaagtctaggtctggt
ggtgatcagcattcatatctgaaggttgattctcttggaagagtgtcattctcttccata
cgtaggcctcgccctcttcttgaagttgatattcctgcatctggtgatggccacaagtca
tctacgaggccactggagaaagagccaatgctggcagcaagaattaccgttgaggatggt
atatgtcttcttctagatgtaaatgatattgaccgtgtgttacagtctagccaggcacag
gacagcagcttccaactgaggcgaaggcgacaggtcctccttgaaggcttagctacatca
cttgagcttgtcgacccttttggccccaacaaacctggcaattcatctggattggccccg
acggatgaccttatttttctccgtattgtttctctccctaaaggacgcaagctcttggca
cggtatctccgacttcttgcccctggaagtgagctgacccgcatagtctgcatggctatc
tttcggcatcttaggagcttgtttgggggtttgccgtcagattctggtgctgcagaaaca
acagttagtcttgccaagaccgtgtcctcctgcgtgcatcacatggagctcagtgccctc
agcgcctgcctcgcagctgttgtctgctcgtcgcagcagccacctctccgccctcttggc
agctctgctggtgacggtgctgctctaatcatcaaatcagtactggacagagcaactgag
ctactggccgacccccattctgcagccaactacagcaggtcaacccgttctctttggcag
gcgtcgttcgatgccttctttgggcttctgacaaaatactgcgacagcaagtatgggagc
attctgcagaggttcagcatgcagggatccaactcaatggctggacctgaagcctcgaag
gccgtcagcagggagatgcccgtcgagctactacgtgcaagccttccgcacaccagcgaa
gaacaacgccagatgcttcttgactttgctcggaaatctatgcctgtgatcggctacaac
cactccggcgctagcggcgggcattctactacttccgaacctgtccccggttaa

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