Triticum dicoccoides (wild emmer wheat): 119286505
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Entry
119286505 CDS
T07278
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119286505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119286505
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119286505
mRNA degradation factors
5'-3' decay
Decapping complex
119286505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119286505
NCBI-ProteinID:
XP_037421782
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All DBs
Position
1A:complement(533757405..533764004)
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AA seq
817 aa
AA seq
DB search
MRGLRADAGGGGASSSSSASTAESSRFDSGQYSFFGKAPLEGLELGGSLADDGGLDGGYG
GGGFGGHDDGASYQLSPVGEEIDCMSNLSEIDDLASTFAKLNRSISGTRNPGVIGDRRSI
SRESSLTTTDWVQEAEFSNWVDHDILGSDELQDSKQLCPQPQYLPQFGESKPLSRTSSYP
LEPLQHRSSEPILGHRSPSFTSYPPPGGGELSYPAQGLTRHSSIPSPGAGYQMGSPSSSL
TGSPYNMPGLPHGLQLGRSMSYTSADLYANNFLQNEWPSQAGSHAFEHLNLQPSLLQQQL
SFPSSSMSSLLFSQQQQQQQRLSLVQPPHHNYLNMQPHLYHHHSPEIIGRFDHIPSVPSP
RDKRSRSGRGKHSMRFSQQQSDTAGQNVDTGGTKFRSKYMSSEEIDTILRMQHSGSHSSD
PYVDDYYHQACIAKRSVNSQQKVNFSPASIKDSHSKSRSGGDQHSYLKVDSLGRVSFSSI
RRPRPLLEVDIPASGDGHKSSTRPLEKEPMLAARITVEDGICLLLDVNDIDRVLQSSQAQ
DSSFQLRRRRQVLLEGLATSLELVDPFGPNKPGNSSGLAPTDDLIFLRIVSLPKGRKLLA
RYLRLLAPGSELTRIVCMAIFRHLRSLFGGLPSDSGAAETTVSLAKTVSSCVHHMELSAL
SACLAAVVCSSQQPPLRPLGSSAGDGAALIIKSVLDRATELLADPHSAANYSRSTRSLWQ
ASFDAFFGLLTKYCDSKYGSILQRFSMQGSNSMAGPEASKAVSREMPVELLRASLPHTSE
EQRQMLLDFARKSMPVIGYNHSGASGGHSTTSEPVPG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcctccgggcggacgccggcggcggcggcgcatcctcctcctcgtcggcctcc
accgcagagagctcgcgcttcgactcggggcagtattccttcttcggcaaggcgccgctg
gaggggctggagctcggcggcagcctggcggatgacgggggcctggacggcggctatggc
ggcggcgggttcggtgggcacgatgacggggcttcttaccagctgtctcctgtgggggaa
gagattgattgcatgagtaacttgtctgaaattgatgatcttgcaagcacgtttgcaaag
ttgaaccgaagtattagcggaacaaggaatcctggtgttattggtgatagacgatcgatt
tccagggaaagttctttgactaccaccgactgggttcaggaagcagagttctcgaattgg
gtagatcatgatatactgggcagcgatgaattgcaggacagcaaacaattgtgtccacag
ccacagtatttgcctcagtttggagagtcgaagccattgagccgaacatcatcctatccc
ctggagccactacaacaccgctccagtgaacctattctgggacatagatctccttcattt
acatcctatcctccaccaggtggtggtgaattatcttatcctgcacaaggtcttacgcgg
cactcgagcattccatcaccaggtgctggttaccaaatgggttctccaagttcgtcgctt
actggttctccatataacatgcctggtctacctcatggactgcaattggggcgaagcatg
tcttacacttctgcagatctatacgcgaacaacttcctacaaaatgaatggccaagtcaa
gctggttcgcatgcttttgagcatcttaatctacagcccagtttattgcagcaacaacta
tcttttccgagtagttcaatgtcttcgttgctattttctcagcagcaacagcagcagcag
aggttgtcactagttcagccgcctcatcacaattacctaaacatgcagcctcacttgtat
caccatcattccccagagataataggcaggtttgatcatattcctagtgtgccttcacca
agggacaagagatcaaggtcaggaagaggaaaacacagtatgcgcttttctcaacaacaa
tctgatacagctggccagaatgttgacactggaggaacaaaattcagatcaaagtatatg
tcatctgaagagattgatactattttaagaatgcagcactctggtagtcacagcagtgat
ccttacgtcgatgactactaccaccaagcttgtatagccaaaagatctgtcaactctcag
cagaaggtgaatttctcccccgcatcaataaaagactcccactcaaagtctaggtctggt
ggtgatcagcattcatatctgaaggttgattctcttggaagagtgtcattctcttccata
cgtaggcctcgccctcttcttgaagttgatattcctgcatctggtgatggccacaagtca
tctacgaggccactggagaaagagccaatgctggcagcaagaattaccgttgaggatggt
atatgtcttcttctagatgtaaatgatattgaccgtgtgttacagtctagccaggcacag
gacagcagcttccaactgaggcgaaggcgacaggtcctccttgaaggcttagctacatca
cttgagcttgtcgacccttttggccccaacaaacctggcaattcatctggattggccccg
acggatgaccttatttttctccgtattgtttctctccctaaaggacgcaagctcttggca
cggtatctccgacttcttgcccctggaagtgagctgacccgcatagtctgcatggctatc
tttcggcatcttaggagcttgtttgggggtttgccgtcagattctggtgctgcagaaaca
acagttagtcttgccaagaccgtgtcctcctgcgtgcatcacatggagctcagtgccctc
agcgcctgcctcgcagctgttgtctgctcgtcgcagcagccacctctccgccctcttggc
agctctgctggtgacggtgctgctctaatcatcaaatcagtactggacagagcaactgag
ctactggccgacccccattctgcagccaactacagcaggtcaacccgttctctttggcag
gcgtcgttcgatgccttctttgggcttctgacaaaatactgcgacagcaagtatgggagc
attctgcagaggttcagcatgcagggatccaactcaatggctggacctgaagcctcgaag
gccgtcagcagggagatgcccgtcgagctactacgtgcaagccttccgcacaccagcgaa
gaacaacgccagatgcttcttgactttgctcggaaatctatgcctgtgatcggctacaac
cactccggcgctagcggcgggcattctactacttccgaacctgtccccggttaa
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