KEGG   Triticum dicoccoides (wild emmer wheat): 119286676
Entry
119286676         CDS       T07278                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    119286676
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119286676
   03036 Chromosome and associated proteins [BR:tdc03036]
    119286676
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     119286676
Chromosome and associated proteins [BR:tdc03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     119286676
    COMPASS/SET1 complex (yeast)
     119286676
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I ANAPC4_WD40 NBCH_WD40 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_TEP1_2nd Beta-prop_SPT8 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_VPS8 Beta-prop_WDR90_POC16_2nd Beta-prop_NUP159_NUP214 DSE1_N Beta-prop_EML Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_NOL10_N WDR90_beta-prop_4th PAC11 Beta-prop_ACSF4 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_WDR41 WD_LRWD1 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 BBS2_Mid DUF4934
Other DBs
NCBI-GeneID: 119286676
NCBI-ProteinID: XP_037421998
LinkDB
Position
4A:complement(546624846..546630077)
AA seq 333 aa
MPRCAGEKEERVTMEVTDEMLKTMEVGLAFRDYIGRISSMDFHSKATNYLVTASDDESIR
LYDIQNAVCLKTINSKKYGVELVCFTTNPTLVLYSSKNGWDESLRLLSLNDNRFVRYFKG
HLDRVVAMSLCYEKDSFLSGSLDRTVLLWDLRADKAQGLLRVQGRPAVSYDDQGLVFAVA
YGGYVRMFDARKFEKGPFDIFSVGNDESEANMIKFSSDGRRLLLTTKAGCIHVLDSFHGN
SLATFNVKPVVTNSTLEASFSPDGNHIISGSGDGSVYAWSVRSGKKVARWGSTDSEPPLV
RWAPGSLMFLTGSSELSCWVPDLSKLGSFAVTK
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgccaagatgcgccggggaaaaggaggagagggtgaccatggaggtcaccgacgagatg
ctcaagaccatggaggtcggcttggccttccgggactatattggcagaattagttctatg
gatttccacagcaaggctacaaactatctggtgacagccagtgatgatgaatcgatacgc
ctatatgacattcaaaatgctgtatgtttgaagaccattaatagcaaaaagtatggggtt
gaactggtgtgcttcactactaacccaactcttgtcttgtattcctcgaaaaatggttgg
gatgaatctctgcgtctactctctctaaatgataaccggtttgtaagatatttcaaaggc
catcttgacagggttgttgctatgtcattatgttatgagaaagacagttttctatctggt
tcacttgatcgaactgttctcctatgggatctgagggctgacaaagcacagggcttgctg
cgtgtgcaagggaggcccgcagtttcatatgatgatcagggtttagttttcgcagttgct
tatggtggttatgtaaggatgtttgatgctcgaaaatttgagaaggggccttttgatatt
ttctccgttggtaatgacgaatcagaagccaatatgataaagttcagcagtgatggaagg
cggcttcttttaaccaccaaagcagggtgtattcatgtgctagattcatttcatggcaac
agtctagcaactttcaatgttaagccagttgtaaccaattcgacattggaggcatcattc
agccctgatggaaaccatattatatctggctctggtgatggtagtgtttatgcttggagc
gttagaagtggaaagaaggttgcgcggtgggggagcacagatagcgagccaccattggtt
aggtgggctccaggatcgttgatgttcttgactggatcttcagaactatcctgctgggtc
ccggacctatcgaagctgggatcgtttgccgttaccaagtaa

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