Triticum dicoccoides (wild emmer wheat): 119288348
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Entry
119288348 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119288348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119288348
03041 Spliceosome [BR:
tdc03041
]
119288348
03009 Ribosome biogenesis [BR:
tdc03009
]
119288348
03016 Transfer RNA biogenesis [BR:
tdc03016
]
119288348
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119288348
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119288348
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119288348
Complex C
U4/U6.U5 tri-SnRNP related factors
119288348
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
Helicases
119288348
Transfer RNA biogenesis [BR:
tdc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119288348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119288348
NCBI-ProteinID:
XP_037423882
LinkDB
All DBs
Position
4A:complement(743258143..743264901)
Genome browser
AA seq
995 aa
AA seq
DB search
MEAALKRKAAEAPADGPDPPLKAPRADAAPPPPAAAERVACLHDVSYPEGYDASASGPRV
VAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLRNQ
QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGSEV
MREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQ
PCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPDTGSDKKREN
GKRQKGLVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDD
EKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGL
IKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRGIC
ILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLRSEDGDPEKLLRHSFYQFQAD
RALPDLEKQVRELEIERSSMVIEDEESVKDYYDLLQQYTTLKKDVRDIVLSPKYVLPFLQ
SGRLVRVQYSTDESTFSIDENVSWGIIINFEKVKTNAEERRPEDCDYTVDVLTRCSVIKD
ISGKKTMKVIPIKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVEEVLS
RFAKDGVPLLDPEEDMEVKSSSYRKAARRIEALESLFEKHDIRNAPHIQHKLKVLHAKQE
IKAKIKSIKKTMRASTALAFKDELKARKRVLRRLGYITSEDVVEIKGKVACEISSADELT
LTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVANLQL
ECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQQL
ILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgccctcaagcgcaaggccgcggaagcccccgccgacgggcccgaccccccg
ctcaaggcgccgcgcgcggacgccgctcccccgccgccggccgccgccgagcgcgtcgcc
tgcctgcacgacgtctcctaccccgagggctacgacgcgtccgcctccggcccgcgcgtc
gtcgcgggcggcggcgagggcgcggccccggccaagacgttccccttcccgctcgacccc
ttccagtccgaggccatccgctgcctcgacaacggcgagtccgtcatggtgtcggcgcac
acgtcggcggggaagacggtggtggcgctgtacgcgatagccatgtccctgcgcaaccag
cagcgggtcatctacacgtcccccatcaaggccctcagcaaccagaagtacagggagttc
aaggaggagttctccgacgtcggcctcatgaccggggacgtcaccatcgagccaaacgcc
tcctgcttggtcatgaccacggagatttggcgcagcatgcagtacaaagggtccgaggtg
atgagggaagtcgcctgggttatcttcgatgaggtgcattacatgcgtgacagggagagg
ggagtggtgtgggaggagagtattgtgatggctcccaaaaactcgcggttcgtgttcctc
tcggcaactgtgcctaatgccaaggagtttgctgattgggttgccaaggtacataagcaa
ccttgtcatatagtatacaccgactatcgacctacacccctccagcactatgtatttcct
gctggaggtgatggcttatacctggtcgttgatgaaaatggtaagttcagagaggacagt
tttcagaaatctctgaatgtccttgcccctgatactggcagtgacaagaagagggaaaac
gggaagcggcaaaagggccttgtctcggcaggcaaaactaatgaagaaagcgacatattc
aagatggtgaaaatgataattcagcgtcaatatgaccctgtgatacttttcagctttagc
aaaagagagtgtgaatttcttgctatgcagatggccaagatggacttgaatggggatgat
gagaaagtgaacattgaaaccattttttggagtgccatggatttgctttcagatgatgac
aaaaagcttccccaggtttcgaatatgcttccgttattgaaacgcggcattggagtacat
cattctggtctgttgcccattttaaaggaagtgattgagatacttttccaagagggcctc
atcaagtgtctgtttgccacagagacattcagtattggattgaacatgcctgcaaagact
gttgtgtttaccaatgtacgtaagtttgacggagatcgattccgatggttgtcaagtgga
gagtacatccagatgagcggccgtgctggtcgtcgaggtattgatcagcgtggtatctgc
atattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaaggaggt
gccgatagtttgaacagtgcctttcatttgagctacaacatgttgttgaatcaactgcgc
tcggaggatggtgatccagaaaagcttcttagacattcattctaccaatttcaagcagat
agagctctccctgatcttgagaagcaagtcagggaactggaaatagaaagaagttccatg
gttattgaagacgaggagagcgtgaaggactactatgatctcttacagcagtacacaact
ttaaagaaggatgtccgtgatattgtactttcgccaaaatatgttctgcctttcttgcaa
tccggaaggcttgttcgtgttcaatacagtacagatgagtccaccttctctattgacgaa
aatgtgtcgtggggaattattataaattttgagaaggtgaaaaccaatgctgaagaaaga
aggcccgaggattgtgattacactgttgatgtcctcaccagatgttctgtaatcaaggat
ataagtggaaagaagacaatgaaggttattcctatcaaatcccgtggagaaccggttgtt
atttcgttgccactttctcagattgatggactaagcagcgtccggatgtacatacccaag
gatcttttgcctgtagaagctcgagaaaacaccttgaggaaagttgaagaagtgctttca
aggtttgctaaagatggggttcctctattggatccagaagaagatatggaagtaaaatct
agctcctaccggaaagctgccagaagaatagaagctctcgagagcttatttgagaagcat
gacatccgtaatgctccccatatccaacacaagctgaaggtcttacatgctaagcaagaa
ataaaagccaaaataaagtccataaagaaaacaatgcgggcttcgactgctctagccttt
aaggatgagctcaaggcacgaaaacgagttcttcgtaggctgggatacatcaccagtgag
gatgtggtcgaaataaagggcaaagtggcatgtgagatcagctcagccgacgaactgaca
ttgaccgagcttatgttcagtggtactttgaaggatgctaccgtggagcagatggtggct
ctgctttcttgctttgtctggcaggaaaagcttcaggatgccccaaagccaagggaggag
ctcgacttgctcttctaccagttgcaagagacggcacgaagggtcgcaaacctccaactt
gaatgcaagatccagatcgacgtcgagtcattcgtgaactccttccgacccgacgtgatg
gaggctgtgtactcgtgggccagagggtccaagttccaccagatcatggagatgacacag
gtgttcgaaggcagcctgatcagggccatcaggcggctggaggaggtcctgcagcagctg
atcctggcgtcccagtcgatcggcgagacccagctcgaagccaagctcgaggaggcggtc
agcaagattaagagggatatcgtgttcgccgcgtcgctgtacttgtga
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