Triticum dicoccoides (wild emmer wheat): 119290642
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Entry
119290642 CDS
T07278
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119290642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119290642
03009 Ribosome biogenesis [BR:
tdc03009
]
119290642
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119290642
Spliceosome [BR:
tdc03041
]
Complex A
U2 snRNP components
U2 related factors
119290642
Complex B
119290642
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119290642
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
90S particles
Helicases
119290642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
Cas3-like_C_2
ABC_tran
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
119290642
NCBI-ProteinID:
XP_037425160
LinkDB
All DBs
Position
4B:420748902..420752519
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAGINGAAAAAAANPSINRWNGRPYSARYLEILEK
RRTLPVWQQKDEFLRVLRDNQTLILVGETGSGKTTQIPQFVLEADGLSNRSMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYK
VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNM
GDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPLKEEGPAGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNGDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TSLGEMMSEFPLDPQMSKMLVISPRYNCSNEILSISAMLSVPNCFLRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNNEDPTWCYENFVNARAMKSADNVRQQLVRIMTRFNLKM
CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCMDHKPEWVI
YNEYVLTTRNFIRTVTDIRGEWLIDIAPQYYDLTNFPSCEAKRVLERLHNKRERERAASR
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgttgtcgacgagacctccgta
tccgcgaagctcggccgcgccggcatcaatggtgccgccgccgccgccgcggccaatccg
tccatcaaccggtggaacggccggccctactcggcgcggtacctggagatcctcgagaag
cgccgcacgctccccgtgtggcagcagaaggacgagttcctccgcgtcctccgcgacaac
cagaccctcatccttgtcggagaaaccggaagtggcaagaccactcagatcccccaattt
gtgctcgaggctgatggtttgagcaaccgctctatggttgcctgcacccagccgcggagg
gttgctgcaatgtcggtctctcggcgtgtcgcggaggagatggatgtcacaatcggggag
gaagttggttacagtatccgattcgaagattgcagcagtcacaaaactgttctcaaatat
ttgacagatggtatgcttctgagagaagcaatggcagacccacttttagagaggtacaag
gtgattgttcttgacgaggctcatgagcgcacattggcaacggatgttctgtttgggctt
ctgaaggaagttctaaagaacaggcctgacttgaagcttgttgtcatgagtgctactctt
gaggcagagaagtttcagggttatttcagtggtgcaccattgatgaaggttcctggtaga
cttcatccggttgagatcttctatactcaggaaccagaaagggactatctagaagctgct
atcaggacagttgtgcagatacatatgtgtgaacctgctggtgatatccttgtattcctt
actggagaagaggagattgaggatgcgtgtcggaaaataaacaaggaagttaataacatg
ggtgatcaggttggcccagttaaagtcgtgccattgtactctactctcccccctgcaatg
cagcagaagatttttgaccctgctccacctccattgaaagaggaaggtcctgctggaagg
aaaatcgttgtgtccacaaacattgctgagacatccctaaccatcgatggtatagtgtat
gttatagatccagggttttccaaacagaaggtttacaatccaaggataagggtggaatcc
cttttggtgtctccaatttccaaggcaagtgcgcatcagagagccggtcgtgctggaaga
acacagcctgggaagtgcttcaggttgtacacagaaaagagttttaatggtgatttacag
ccgcagacgtacccagaaattcttcggtcaaacctggcaaatacagttcttactctgaag
aagcttggaattgacgacttagtgcattttgacttcatggatcctcctgcacccgaaact
ctaatgagggccttggaagttctgaactatttgggggcactcgacgatgaaggcaaccta
acatctttaggtgaaatgatgagtgagttccccttagacccacagatgtcaaagatgctt
gtcatcagtccaaggtacaactgttcaaatgagatcctctcaatatctgccatgctatca
gtacccaattgctttctccggcctagggaggcacaaaaggctgctgatgaggcgaaggct
cgatttgggcacatcgatggggatcatctgacacttttgaacgtgtaccatgcatacaag
caaaacaatgaggatcctacatggtgttatgagaattttgtcaatgcccgggcgatgaag
tctgctgataatgttagacaacaacttgtccgcatcatgaccagattcaacctcaagatg
tgcagtacagacttcaacagtcgcgagtactatgtcaacatcaggaaagcaatgctttca
gggtactttatgcaggttgctcatctggagcgaactgggcattacttgaccgttaaggat
aatcaggttgtccatcttcatccctcgaattgcatggaccataagccggagtgggtcatc
tacaatgaatatgttttgaccaccaggaatttcatccgcacagtcaccgatatccgtgga
gagtggctgatcgatatagctccacagtactatgatctgaccaatttcccatcatgtgag
gccaagcgtgttcttgagaggctacacaataagagggagagggaaagagctgctagtagg
aactga
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integrated database retrieval system
