Triticum dicoccoides (wild emmer wheat): 119294537
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Entry
119294537 CDS
T07278
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119294537
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119294537
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119294537
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119294537
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
119294537
NCBI-ProteinID:
XP_037428634
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Position
4B:8998510..9006170
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AA seq
883 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPREKAKAETRDWLNSVVSDLENQIDNFEAELEGLSFKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSILIKGVAAVSTTAVLSTKSPTATSPTQATVSTISQGTSQDQAEETTTLES
NPESVPQTPPPKGGNLGPSVPVVPTAISTSAAAVSVSADTITSPGPVRPVIPATAPTIFA
PSAAVRNAPESMPAVASTPANLSTAVKDDESMSFPPRRPSPAVTEIGLGRGIARGLTSQP
LAAPISVGPVPGNGSITAIPPINDLSKRNIMNTDERVNSGGLSQQLVSPLGSKVQPQPVL
KTNDAVSSDSSNTSESAVIGGRVFSPPVVPGAQWRPQAPAGFQNQSETGQFRGRPEVTDQ
REKYLQRLQQVQQQQGNLLNASHITGINQKQFPTQQPNSLLQQFNSQSSSISSQGGLGLG
GQGPGIPSAFSSQLEPHESQIPEQYAGQTKSDEQQGLADDASVESAATTGPNKHTNEDDT
KAPYSNPPASVAEGTQLSRDSDLSPGQPMQAGMPSSGVGVIGRRSVSDFGAIGDNLSGAS
VVSGHDHLYNLQMLEAAYHRLPQPKDSERAKTYIPRHPSVTPASYPQIQAPIVTNPAFWE
RLGSDTLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEY
ERGSYVYFDFHLADDGNGWCQRIKNDFTFEYNFLEDELSVQPN
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgggggccagtcggaagctgcagggcgagatcgaccgcgtgctcaagaaggtgcaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgccaaccag
aaggagaagttcgaggccgacctcaagaaggagatcaagaagctgcagcgctaccgcgac
cagatcaagacctggatccagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctcatggatgcccgcaagcagattgaacgcgagatggaacgatttaaggtc
tgtgagaaggaaactaaaaccaaggccttctcgaaagaagggttaggtcaacagcctaaa
actgatcctagagagaaggctaaagctgaaacaagagattggcttaacagtgtggttagt
gatttggaaaatcagattgataattttgaagcggagcttgaaggactttcatttaagaaa
ggaaaacaaagacctcctcgattggtacatttagagaaatctattacgcggcataaggct
catataaaaaaattggagtcaattctgagactcttggataatgatgagttgagtcctgag
caagtcaatgatgtgaaagatttcctagaagactatgttgaacgtaatcaggaagatttt
gatgaatttagtgatgttgaggatctctatagcacattgcctatggagaaggttgaagca
ctcgaagacatggtttcacttgctccttccattcttatcaagggtgttgctgctgtttcc
actactgcagttttgagtacgaagagtccgacagcaacttcacctactcaggctactgta
tcaacaatctcacaagggacatcacaagatcaagcagaggaaacaactacgctagaaagc
aatcctgaatcggtgccacaaacaccacctccgaagggtggaaatctgggaccatcagtg
ccagttgtgcccactgccattagtaccagtgctgcagctgtttccgtttcggcagatact
attacttccccaggcccagtacgaccagttattcctgccacagcacccacaatatttgct
ccttctgctgctgttcgaaatgctccagagagcatgcctgctgttgcttcaactcctgca
aacttatctactgccgtgaaggatgatgaaagcatgagctttcctccacgtagaccgtct
cccgcagttactgaaattggtcttggcaggggtattgcccgtggcttaactagtcagcct
ttagctgctcccataagtgtaggcccagttccaggaaatgggtccattactgcaattcct
ccaataaatgacctgtccaaacgaaacataatgaataccgatgagagggttaacagtggc
ggtctttctcagcagttggtttcacctcttggtagtaaagttcaaccacagccggttctg
aagactaacgacgcagttagctctgattccagtaacacaagtgaaagtgcggttattgga
ggaagggtattttctcctccggttgttcctggggctcagtggaggcctcaagctcctgct
ggtttccaaaatcaaagtgaaactggtcaatttcgtggaagacctgaggtcaccgaccaa
agggagaagtacttgcaaagattgcaacaagtacagcagcagcagggcaaccttcttaac
gcttctcatataacaggcatcaaccagaagcaatttccaacccagcagcccaattccctc
ttacaacagtttaattctcagagttcttctatctcttctcaagggggccttgggctaggg
ggtcagggaccaggtatcccttctgccttctcgtctcagctagaacctcatgaatcccaa
attcccgagcaatacgctgggcaaacaaaaagtgatgagcaacaaggcttggccgatgat
gctagtgtggagtctgctgcaacaactggacctaataagcacaccaatgaagatgacact
aaggctccttattcgaatcctccagcatccgtagcagaaggcacccagctatctagagac
tctgatctatcacccgggcagcctatgcaagctggcatgccatcatctggtgttggtgtt
atcggccggaggagtgtatctgattttggagcaattggagacaatctcagtggagcttcg
gtagtttcgggtcacgatcacctttataatttgcaaatgctcgaagctgcataccacagg
cttccccagcccaaggactctgagcgtgcgaaaacttatattccgaggcacccttcagtg
acccctgctagttacccacagattcaggcaccgattgtgacaaatcctgctttttgggaa
aggctcggtagtgatacattgtctacagatatgttattctttgcattctactatcagcag
aactcgtaccaacagtatttggccgccaaagaactaaaaaagcagtcatggagatttcac
aggaagtacaatacttggttccaacggcatgtggagccacaggtcacgaccgatgagtat
gagcggggatcgtacgtgtactttgattttcatctcgcagatgacggcaatgggtggtgc
caaaggatcaagaacgacttcacatttgaatacaacttccttgaggatgaactgtcagta
caaccaaactag
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