Triticum dicoccoides (wild emmer wheat): 119295080
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Entry
119295080 CDS
T07278
Name
(RefSeq) exosome complex component RRP43-like
KO
K12586
exosome complex component RRP43
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119295080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119295080
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119295080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF5769
Motif
Other DBs
NCBI-GeneID:
119295080
NCBI-ProteinID:
XP_037429307
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All DBs
Position
4B:70926596..70930389
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AA seq
306 aa
AA seq
DB search
MSAETDATAAGGLAGEMEVEAYRRLFPLAFLERHLRESVRPDARRLAEARPTTVALGAVS
SAHGSALVRLGDTAMLASIKLEVMSPPAETPDQGSVAVEFHMPPICSPLVRPGRPAEAAP
VISKALEDVLMSSGMLNLKELCLISGKASWVAYLDVYCLNADGSLFDAALISVVAAFTHL
EIPLVSVGDDGRVFTVGGNEGKSKYELVNREKRKLTLGDIPFPLTCALHKDSILADPTAE
EESIIETSVTVVLDSSGRLVSIQKPGGGVTSMATIKACIGLAKERGQKLKEILTDSVEAM
EVDQAE
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggagaccgatgcgacggcggccggcgggctcgcgggggagatggaggtcgag
gcgtaccgccgcctcttccccctcgcgttcctcgagcgtcacctccgcgagtccgtccgg
cctgacgcccgccgcctcgccgaagcccgccccaccaccgtcgcgctcggcgccgtctcc
tccgctcacggctctgccctcgtccgcctcggtgacaccgccatgctcgcgtcgatcaag
cttgaggtgatgtcgccccccgccgagacaccagaccaaggatcagtcgctgtggagttt
cacatgccgcctatctgctccccgcttgtaagaccaggacggccagcagaggctgcgcca
gtcatatccaaggccctggaggacgtcctcatgagctctgggatgttaaatttgaaggag
ctctgtttgatcagtgggaaggcttcgtgggtagcatacctggatgtctattgtttgaat
gctgatggatctttgtttgatgctgcactgatctcagtggtggctgcatttacacatttg
gaaattcccctagtatctgttggtgatgatggtagagtgtttactgttggaggcaatgaa
ggcaaaagcaaatatgaattggtaaacagagaaaagaggaagcttactcttggtgacatt
ccatttcctctcacatgtgcacttcacaaggatagtattctagcggacccaactgctgaa
gaagaatcaataatagagacgtctgtgacagttgttctagattcttccggacgcttagtg
tcaatacaaaaacctggaggtggagtgacgtccatggcaacaattaaggcgtgcattggc
ttggcaaaagaaagaggacaaaagttgaaggaaatactcacggactccgttgaagcaatg
gaagttgaccaagctgaataa
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