Triticum dicoccoides (wild emmer wheat): 119295386
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Entry
119295386 CDS
T07278
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119295386
09123 Folding, sorting and degradation
03018 RNA degradation
119295386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119295386
03041 Spliceosome [BR:
tdc03041
]
119295386
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119295386
mRNA degradation factors
5'-3' decay
Lsm complex
119295386
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119295386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TSNR_N
Motif
Other DBs
NCBI-GeneID:
119295386
NCBI-ProteinID:
XP_037429704
LinkDB
All DBs
Position
1A:607282025..607289349
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AA seq
99 aa
AA seq
DB search
MASVGPTLESLVDQVISIITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgtggggccgacgctcgagtccctcgtcgaccaggtgatctccatcatcacc
aacgacggccgcaacatcgtggggactctgcgcgggttcgaccaggccaccaacataatc
ctcgacgagtcccacgagagggtctactccactaaggagggagtacagcagcttgtcctt
ggtctgtacatcatcaggggtgataacataggcgtggtgggtgaggtggacgaggagctg
gacgcggcgctggacatgtcgaagctgagagcgcagcccctcaagccagtcatccactga
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