KEGG   Triticum dicoccoides (wild emmer wheat): 119295386
Entry
119295386         CDS       T07278                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018  RNA degradation
tdc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119295386
  09123 Folding, sorting and degradation
   03018 RNA degradation
    119295386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119295386
   03041 Spliceosome [BR:tdc03041]
    119295386
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     119295386
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     119295386
Spliceosome [BR:tdc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    119295386
SSDB
Motif
Pfam: LSM TSNR_N
Other DBs
NCBI-GeneID: 119295386
NCBI-ProteinID: XP_037429704
LinkDB
Position
1A:607282025..607289349
AA seq 99 aa
MASVGPTLESLVDQVISIITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNIGVVGEVDEELDAALDMSKLRAQPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccgtggggccgacgctcgagtccctcgtcgaccaggtgatctccatcatcacc
aacgacggccgcaacatcgtggggactctgcgcgggttcgaccaggccaccaacataatc
ctcgacgagtcccacgagagggtctactccactaaggagggagtacagcagcttgtcctt
ggtctgtacatcatcaggggtgataacataggcgtggtgggtgaggtggacgaggagctg
gacgcggcgctggacatgtcgaagctgagagcgcagcccctcaagccagtcatccactga

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