Triticum dicoccoides (wild emmer wheat): 119295389
Help
Entry
119295389 CDS
T07278
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tdc03036
]
119295389
Chromosome and associated proteins [BR:
tdc03036
]
Eukaryotic type
Meiosis-specific proteins
Others
119295389
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_PDDEXK_dom
SHOC1_2HhH
SHOC1_N
SHOC1_HhH_tandem
SHOC1_ATPase
ZIP2_M
YycE-like_N
Motif
Other DBs
NCBI-GeneID:
119295389
NCBI-ProteinID:
XP_037429706
LinkDB
All DBs
Position
4B:complement(121580218..121588881)
Genome browser
AA seq
1740 aa
AA seq
DB search
MRTRFLAADYFSPPSAASCSDQALTLASLRFPPLPVPSLPPDPHFPFPLPFPAAADLPAV
SIPGDDLDSLPISSALSEFLAAVIPQALPAPAIPAADEGLDDFLYDRGGYRKGFSLRESV
AFKIPDGLDEISREKDGKGDGSRSDRLGTSTDTKRWELLKEHIFEVVEVDLPQILEGHVA
SFGGDESGDGVILLFGVPDAKIHLEFIDIDTEMTLSYPTELADSIYQVEKIPVKHNDEEH
LSARNINLLEIAALDCGVTIPLLEVHRHSWELNGCPTKAEMSNIFHNLVEHLGEAQVQHP
ALNSTEFSRSTDMDMLAFVSKDVPCADYQADKPITVRAAVEMDLVRINDNLLLERNSALY
PLKPDGTFSDLPCSVLLEEAQIIDFPSEDLFKMLVQSDAAELNTSDEIFKDDFNPARRFY
ESVVSSELVLVDDTFRSLPTPILSDDDMTLRSMVPSMGEVLCSLKTHSLSAADRIYLDWH
LLLEVPCNREISSTYASMVEEVKSCQLNSEMQVNCQQTSALGFDFLEYFWTSAKHQDEDK
QNNIYVPTPLPHDPPPVVETAQKYRQESDTGGHGHMEKPSSGKAASLFESMSQSSDINFY
LNVRSGTKRGTNDENISTLDIPTLNEQATSFPSRPKVDKLIEIHPVSLSDSIRALIKHIH
RSYTTALQESAYLRHTFSDGHLSISKQKLLGLITGDGSNGFDNHCKHEDKMELIVLYGLK
QAAYYLCFFGLHAGHLYISNLIGSFENIPERLRNIHSFIGEALSKAEKHQIDSHPSLHDI
EMILRSNTHTSQQILIVADTAFWLPLGQKLTSIKMTFVELGKDPAAAYLDPVDKPNPTTW
VLRGLPKSDCILLDNKNIPASFPFSEFGIVLEYGGPDKLSTLLSLAPNLDSFPQLHFLYV
KVDVEDPSVAVVEDNPTDQELRATLDTVLHALQKDLQEKMNKMRIVDSLNFIPATNQLQV
RQENLCKYSTADSTKKLPADDQLLKQENLEKEFVDAHNFVPTAEQRHREEMLSKRTILHS
QHFVPAVEKSSSTSSVSANVIKAPQDNLSGTDLPSGVKVGRLTPGRLSTPAIVVNTGSHG
KNMLFSRRSSYQQILSLEKGGMQVVERDVDLPVDLILSTAACLVWFETKIFGSNELTASA
ETSSITNFVEIIATNILMSISFCFCGCIMVFEGEPHSLSAVMESSDSLYAAAASLMMNVQ
IFFSCTPKLTDEIVLSCIRNVNMLNKAPSPDIPESESLAESFLTKFPSINPLSAYSMLSC
GSSLVEFLSWSHERRIQAVEKYLLSPQSISLFNALCKFGELGESRSVMTEGSSVDSDICS
ALLQSPSKRKRCASQVFAVPTSDPLHPDPLNQLPGDYVEHNNVFPQPKLRRFSDAEDATP
QLPEVFMFDQSLSRGGEGVSCLPRKHDIEAIIGNQIMGDHISNGFTADTREYNRRRVNNM
VDTYDFSWQPESGGKEPMESSFPASGPSFSKAYSHPVFPSALEINDDTGYWDISGGAHDT
WKGHVHGGIASTSCRNDVGSRYHEPTEEIMQKGHVHGDIASTSCRNDVGSRYHEPREEIM
HDPGSSLAFLKQHSGFHATPHGSSWEIDYLRQMNEKRRAREERSRCNTSAMMSNSRMRDG
AAKIINPPLIGSFRYRGDGDAPLRNRSPPVGTRHYEKAREGTKAHTHRARKDFKMQPSVS
HGNRIEPSIYPSWTPIDTRARQKLSFATYGKEKQSKLVWRDPNSSGAECGFRKRYREEGT
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgcggactcgcttcctcgctgccgactacttctccccgccgtcggcggcctcctgttcg
gatcaagccctaaccctagcgtccttgcgcttccctcctctccccgtcccctcgcttccg
cccgatccgcatttcccgttccccctccctttccccgccgcggccgacctccccgcagtc
agcatcccgggcgacgatctcgactctctccccatatcctccgcgctatctgagttcctc
gcggccgttattccgcaggcccttcccgcaccggctatccccgccgccgacgagggattg
gatgatttcctctacgacaggggcgggtatcgcaagggttttagcttgagggagtctgtt
gcattcaaaatccctgatggattggacgagattagccgcgagaaggatgggaagggagac
ggatccaggtcagatagattggggacctccactgacacgaagagatgggaactgctgaag
gagcacatatttgaggttgtagaggtcgatctccctcagattttggaaggacacgttgca
tcctttggtggtgacgagtctggtgatggtgtcatcttattgtttggtgttccagatgcg
aaaatccacttggagttcattgatattgacactgagatgacattaagctatccaaccgaa
cttgcggattcaatttatcaagtagagaaaatccctgtgaagcataatgatgaggaacat
ttgtctgcaaggaatattaaccttttagagattgcagcattagattgtggtgtaacaata
ccactactggaggttcataggcattcttgggagcttaatgggtgtcccactaaggcagag
atgtctaatatttttcataaccttgttgaacatttgggtgaagcacaagttcagcatcca
gcgttgaactcaactgagttctcaagatcaactgatatggacatgttggcctttgtttcc
aaagatgtcccatgtgcagactatcaagcagataaaccaataacggttagggctgcagta
gaaatggatcttgtgaggatcaatgataatcttctacttgagagaaactcagcattatac
cctctcaagcctgatggcaccttttcagatttgccttgctcagttcttttagaagaagca
cagatcattgatttcccttcagaggatctcttcaaaatgcttgttcagtcagatgcagct
gagctgaatacatctgatgaaatattcaaagacgacttcaatccagcaaggcgtttctat
gaatcagtagttagctctgagttggtgctggttgatgatacattcagatcactacctaca
cctattttatctgatgatgatatgacactgaggtctatggtcccctccatgggagaagta
ctttgctccctgaaaactcattcactctctgcagccgacagaatttatttggactggcat
cttttattggaagttccatgcaaccgggagatatcctctacctatgcaagcatggttgag
gaggtaaaaagttgccagttaaattctgagatgcaagtcaattgtcagcagacatcggca
cttggttttgattttcttgagtatttttggacaagtgcaaaacaccaagatgaggacaaa
cagaacaatatttatgtgcctacccctctacctcatgatccacctcctgtagtggaaaca
gctcaaaaatacagacaagaaagtgatactggaggccacggccacatggaaaagccaagt
tcaggaaaggcagcttccttattcgagtcaatgtcacaatccagtgacataaatttctac
ttgaatgtcagaagcggcaccaagagaggaactaatgatgaaaatatttctactttagat
atccctactttaaatgaacaagcaacttcttttccaagcaggcctaaagttgacaagctc
atagaaattcatcctgtcagcctctcagattctatccgagcccttatcaaacacatccat
agaagctatacaactgctttgcaagaaagtgcatatttgaggcatactttctcggatggg
catttaagcatttcgaagcagaagcttcttggactgataactggagatggttcaaatggc
tttgataatcactgtaaacatgaagataagatggaactcattgtactctatggattaaaa
caggctgcatattatctatgtttctttggtttgcatgctggccatctgtacataagcaac
ctgattggaagctttgaaaatattcctgagaggttaagaaatattcatagtttcattggt
gaagcactgtcgaaagctgagaagcatcagattgactctcacccatcattgcatgacatt
gaaatgatcctgagatctaatacacacaccagccaacagatccttatagttgctgataca
gctttctggctgccattgggtcaaaaattaacttcgattaagatgacatttgttgagcta
ggaaaagaccctgctgcagcttatttagatccggtggacaagccaaaccctacaacttgg
gtgctcagaggattgccgaaatcagactgcattctgctagataataagaacattccagct
tcattccctttcagtgagtttggcatcgtactggaatacggaggtccagataaattatct
accttgttgtctctggctcctaatttagatagttttccacaactgcatttcctctatgtc
aaagtggatgttgaagatccttcggttgcagttgttgaggacaaccctactgaccaggag
ttgagagccacactggatacggttttgcatgcacttcagaaagatctgcaagagaagatg
aacaagatgcgtattgttgattcattgaactttataccagcaactaatcagttgcaagta
cggcaggaaaatctgtgcaaatatagcactgctgattcaacaaaaaaattgcctgcagat
gatcaactgctcaaacaagaaaatttggagaaagagtttgttgatgctcataattttgtt
cctacagctgaacagcggcacagagaggaaatgttgagcaaaagaactatcctccattca
caacattttgtgcctgcagttgagaagagcagctctacctcttctgtatctgcaaatgtg
ataaaggccccacaagacaatctatctggtaccgacttgccttccggtgtaaaagttggc
cgcctcactccaggaagattatccaccccggcgattgttgtaaatactggaagtcatgga
aagaatatgcttttctctcggagatcatcttatcagcagatcctatctttggagaaagga
ggaatgcaggttgtggaacgagacgttgatcttcctgtggacctaatactcagtactgca
gcttgcctagtatggtttgagacaaaaatctttgggagcaatgaattaacagcatcggca
gagacatctagtataacaaattttgtggagatcattgcgaccaacattctgatgtcaatt
agcttctgtttctgtggttgtataatggtctttgaaggtgaacctcactctctttctgct
gtaatggagtcatctgattctctatatgctgcagctgctagtctgatgatgaacgtgcag
atattcttctcatgcacacccaagttaacagatgagatagttctcagttgcattaggaat
gtgaacatgttgaataaagctccttctccagatatacctgaatcagaaagcttggctgaa
tcatttctcacaaaattcccttcaatcaatcccttgtctgcatacagtatgctttcttgt
ggaagcagccttgtggagttcctcagttggtcacatgagcgtcgtatacaggctgttgag
aagtatctgttgtccccgcagagcatttctctgttcaatgctttgtgcaaattcggtgag
ctaggtgaatctaggtctgtgatgactgaaggctcttctgtagattcagacatctgtagt
gcattgttgcagtctccaagtaaaaggaaaaggtgcgcctctcaagtttttgcagtacca
actagtgatcccctccatccggatcctctaaaccaattgcctggtgattatgtagaacat
aacaatgtattcccacagcctaagttgaggaggttctccgacgcggaggatgcaacgcct
cagctcccagaggtctttatgttcgatcaaagtttgagtaggggaggtgaaggggtctct
tgtctgccaagaaagcacgatattgaggcaataattggcaatcagatcatgggtgatcac
atcagcaatggatttactgcagatacgagggaatataaccgaagaagggttaacaatatg
gtggacacatacgacttctcttggcaaccggaatcagggggtaaagaacctatggaaagc
tcttttcccgcaagcggaccatcattcagcaaagcttacagtcatccagtatttccatct
gcattagagatcaacgatgatactggttactgggacatttcaggaggtgcacatgacact
tggaagggtcatgtacatgggggtattgcctcaacctcttgcagaaatgatgtgggcagc
agatatcatgagccaacagaggaaataatgcagaagggtcatgtacatggggatattgcc
tcaacctcttgcagaaatgatgtgggcagcagatatcatgagccaagagaggaaataatg
catgatccaggaagttcacttgcttttctgaaacagcattccggctttcatgcaactcca
catggctcaagctgggaaattgattatctcaggcaaatgaacgaaaaaagaagagcacgt
gaggagagatcaagatgtaatacatcagcaatgatgtcaaactcaaggatgagggatggg
gccgctaagatcataaatcctccacttattggatccttcagataccgaggagatggagac
gctcctttgaggaaccggagcccacctgttgggactcggcattatgagaaagccagagaa
ggaactaaagcacatacccatagagcaagaaaagatttcaagatgcaaccaagtgtaagt
cacggaaacaggatagagccgtccatatatccatcgtggactcccattgacacgagagcc
agacagaaactttcatttgcaacatacgggaaggagaagcaaagcaagttggtctggaga
gacccaaatagctctggtgctgagtgtggcttccggaaaagataccgggaagaaggtacg
tag
DBGET
integrated database retrieval system
