Triticum dicoccoides (wild emmer wheat): 119295489
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Entry
119295489 CDS
T07278
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tdc00536
]
119295489
Glycosaminoglycan binding proteins [BR:
tdc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119295489
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Linker_histone
YL1
Motif
Other DBs
NCBI-GeneID:
119295489
NCBI-ProteinID:
XP_037429821
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Position
1A:complement(609009934..609013919)
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AA seq
1113 aa
AA seq
DB search
MGVASPSPPPPAAAAANQARPPDPPTPTPAQPTGGGGGGGGMAVAPPSSPPPAAAAAGGS
PNPTSTEGQGKMVVASPSTVPPPTDADGSQQPTYPEMIKQALTELGGTSGRIAIAAFILG
RFKEGLPAAHDKLLRVHLRRLVSQGVVRGYGSEARACYVFPASNTKSRGRPRKSSTRLLL
TASPTLPLPLPAPPTNEYEENLDLSLDTSSGGLRSSRGRPLLPALPAPKNLLDLSLVPQS
GGSQISSDDDDDDDYSTSSDDDDDDDEDDYSSGDDKDDEYTPARAYALIVHGAKRGRPRK
RKRGPGRTRKLLLCANSSVTKKGRGRPRKKQKLGSSQAAFQNGTPGGGFSTPKRGRGRPR
KDAQGLSTGVKRGRGRPRKDAQGLSTGVKKGRGRPRKESQGMSTGVKSGRGRPKKEPEDG
VPEADSSETESDAESDSSLTGSDTESGSPNVSRWLKEGFGNPTTIATPPAAVRPASRGLN
IGSLRPTIERPPPAARSPGTLVYSAASAGMKKPLGRPRKKGSSKAPAEAASTGIKKPRGR
PRKERPPQAMSAQAGDAAAPAPETGNATPAPETGHVNPASETRDAAASAPEAEAGDASET
RDAAASAPEAGDAAATAPGENGDAAAPAPDENGAGTPAKTGDGASTGIKRPRGRPRKERS
PAPMSRETGDAAPDENGAATPAEAGDAASTGFKKPRGRPRKEKPPASISAETGDATPAGT
GDAETGDATPAGTGDAETGDVTPTETGAATPAEGGNAASTGIKRPLGRPRKVKKFGRPRK
EKPEEATMSDETGDDAGDARSAETGAATPGGDSASAGVKRGRGRPRKERPEAAISAESGD
AETETERKKAKVARPTGDGGIKRGLGRPRKVKRGRPQKEKPASDDAMSTGIKGPLESPRS
YYALSAGTGKAVSTGTLESPRTAEKPSAGDIVSMVMRRRRALPRSEQPSEAGRVKSSGGI
FGYVRESSGKQEKEGLASPGEGEKTPQTKEGVVAALGGGEETGLTADAPVSAEKAIAGDA
AVVEGTGGANEACSDKLGSCAISEKSASGPRHVEAVGGATESSSNKLGRAGAVEAENAAE
AGKVEKVESDKKPRVEGEGGEDKLGSAERCVVS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcgcctctccctcgccgccgccgcccgccgccgccgccgctaaccaagctcgc
ccgccggatccaccaacccccaccccagcccaaccaacaggaggaggaggaggaggggga
ggcatggcggtcgcccctccttcgtcgccgcctcccgccgccgccgccgccggcggcagc
ccgaaccctacctccaccgagggccaaggaaagatggtggtcgcctctccttccacggtg
ccgccgcccaccgacgccgacggcagccagcagccgacctaccccgagatgattaagcag
gcgctgacggagctgggaggcacctccggccgcatcgccatcgccgccttcatcctcggc
cgcttcaaggagggcctccccgccgcccacgacaagctcctcagggtccacctccgccgc
ctcgtctcccaaggcgtcgtccgcggctacggatcagaagccagagcttgctacgtcttc
ccggcctccaacaccaaaagccgtggccggccccgcaagtcgtcgacccgcctcctcctc
accgcgtcgccgaccctgcccctccccctccctgcgccgcccaccaacgagtacgaggaa
aatttggatctcagtttggatacatcttctggaggattacggagcagtcgtggccggccc
ctcttgccggcactccctgcgcccaagaatttgttggatctcagtttggttcctcaatct
ggagggtcacagattagcagtgatgatgatgatgatgatgattactccacttccagtgat
gatgatgatgatgatgatgaagatgactacagcagtggtgatgacaaggatgatgaatac
actcctgcgcgtgcatatgctttgatcgtccatggagcaaagcgcggacgcccacgcaag
cgcaagagggggccaggccgtactcgtaagcttctgctgtgcgcaaattcctcagtcacc
aagaaaggccgtgggaggccaaggaagaagcagaaacttggctcgtcacaagctgctttt
cagaatggaaccccaggaggtggtttctcgacgcccaagagagggcgtgggaggccgcga
aaggatgcacaagggctgtcaaccggtgtcaagagaggccgtgggagaccgagaaaggat
gcacaagggctgtcaaccggtgtcaagaaaggccgtggcagaccgagaaaggagtcacaa
ggaatgtcaacgggtgtcaagagtggccgtgggaggccgaaaaaggagccagaagatggt
gtcccagaagcagactcttctgaaactgaatcagatgcagagtcagactcttctctaact
gggtcagacactgagtcaggctctccaaatgtgtcgaggtggttgaaggaagggtttggg
aatccaacaacaatagcgacgccgccagcagcagttaggcctgcgtccagggggctcaat
atagggtctctgaggccaacaatagagaggccaccaccagcagcaaggtctcctggaact
cttgtttactctgctgcgtccgcgggaatgaagaaaccgcttgggaggccaagaaagaag
ggatcatcaaaagcgcctgctgaggctgcgtccacggggatcaagaaaccgcgtgggaga
ccgagaaaggagagaccaccacaagcaatgtctgctcaagctggagatgcagcagcgcct
gctcctgaaactggaaatgcaactcctgctcctgaaactggacatgtgaaccctgcttct
gaaactagagatgcagcagcatctgctcctgaagctgaagctggagatgcttctgaaact
agagatgcagcagcatctgctcctgaagctggagatgcagcagcgactgctcctggtgaa
aatggagatgcagcagcgcctgctcctgatgaaaatggagcaggaacgcctgccaaaact
ggagatggtgcgtcgacggggatcaagagaccgcgtgggaggccgagaaaggagagatcg
ccagcaccaatgtctagagaaactggagatgcagcgcctgatgaaaatggagcagcaacg
cctgctgaagctggagatgctgcttcaactggattcaagaaaccgcgtgggaggccgaga
aaggagaaaccacctgcatcaatctctgctgaaactggagatgcaacccctgctgggact
ggtgatgctgaaactggagatgcaacccctgctgggactggtgatgctgaaactggagat
gtaacccctactgaaactggagcagcaacgcctgctgaaggtggaaatgctgcatcgaca
gggatcaagagaccgcttggaaggcctagaaaggtgaagaagtttgggaggccaagaaag
gagaagccagaagaggcaacaatgtctgatgaaactggagatgatgctggagatgcaagg
tctgctgaaactggagcagcaacgcccggtggagactctgcgtcggcgggggtcaagaga
gggcgtgggcggccaagaaaggagaggccagaggcagcgatttctgctgaaagtggagat
gccgaaacagaaacagaaaggaagaaggcaaaagtagcaaggccgactggagatggtggg
atcaagagagggctcgggaggccgaggaaggtgaagcgtgggaggccccaaaaggagaag
ccagcatcagacgatgccatgtcaacgggaatcaagggaccgctcgagtctccaagatca
tactatgcattatctgccggaactggaaaagccgtgtcaacgggaacgctggagagccca
aggaccgcggagaagccgtcggcaggcgacatcgtgtcgatggtgatgaggagaaggcgt
gcgctgcccaggagcgagcagccctctgaagctgggcgcgtgaaatcctctggcgggatt
tttggatacgtgcgagaatccagtggtaaacaagagaaagagggcctggcatcacctggg
gagggggagaaaacaccacagaccaaggaaggtgtggtggctgctttggggggcggtgag
gaaactgggcttactgcagatgcgccggtttctgcagagaaggcaatagcgggtgatgcc
gctgtggttgagggaactggaggtgcgaatgaagcttgttctgataagctgggttcttgt
gcaatttcagagaagtcggcgagtggtcctcggcatgtggaggctgtaggaggtgcgaca
gaatcttcatctaataagctggggcgtgcaggtgcagtggaagcagagaatgcagcggaa
gcagggaaagtggagaaggttgaatctgataagaagcctcgtgtggagggggagggggga
gaagacaagctgggatctgcagaaagatgtgtggttagttga
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