Triticum dicoccoides (wild emmer wheat): 119295808
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Entry
119295808 CDS
T07278
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119295808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119295808
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119295808
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Step II factors
119295808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
AAA_16
nSTAND3
TsaE
ABC_tran
Flavi_DEAD
Sigma54_activ_2
PhoH
Motif
Other DBs
NCBI-GeneID:
119295808
NCBI-ProteinID:
XP_037430161
LinkDB
All DBs
Position
4B:complement(213033860..213038412)
Genome browser
AA seq
1234 aa
AA seq
DB search
MAPPAAEGPGDDGLRKLEYLSLVSKVCSELETHIGVGDKVLAEFITELGRDAPSVADFDA
KLKANGADLPDYFVRTLLTIIHAILPPPSHNPSSAASQSNSKYRALSRPDDADRARELRL
ELERDANAAAATTPAPSRDRSRDDRSRDRDHDRTRDERGRDRDHDRSRDRDRGRGDRSHN
RDRAHDDRGQDRNHDRGREHDHGWDRDRDRGRDRDREGDRDGNGRRDQDCLQQRDRDTGK
AHGRSRRYVDEEDGQQERAGGRKTENTMTNSSGEPELYQVYRGRVTRVMDTGCFVKLEDV
RGGREGLVHVSQMASRRVANAKEVVKRDQEVFVKVVSVKGDKLSLSLRDVDQDTGKDLLP
MQRGVEDAPRTNPSVGSAAAAGPGRRLGLSGIVITEEDEVAPISRRPLKRMSSPERWEAK
QLIASGVLDVRDYPQFDEDGDGMLYQEEGAEEELEIELNEDEPEFLQGQSRFSIDMSPVK
IFKNPEGSLSRAAALQTALIKERREVREQEQRAMLDSIPKDLNRPWEDPMPDTGERHLAQ
ELRGVGLSAYDMPEWKKEAYGKALTFGQRSKLSIQDQRQTLPIYKLKKELIQAVHDNQVL
VVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGY
AIRFEDCTGPETVIKYMTDGMLLREILVDENLSQYSVVMLDEAHERTIHTDVLFGLLKQL
VKRRPDMRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYTKQPESDYLDAALITV
LQIHLTEPEGDILVFLTGQEEIDHACQCLYERMKGLGKDVPELIILPVYSALPSEMQSKI
FEPAPPGKRKVVVATNIAEASLTIDGIYYVIDPGFAKINVYNSKQGLDSLVITPISQASA
KQRAGRAGRTGPGKCYRLYTESAYRNEMSPTTIPEIQRINLGSTVLNMKAMGINDLLSFD
FMDPPAPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDE
ILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFE
NFVQSRSLRRAQDVRKQLLTIMDRYKLDVVAAGKNFTKIRKAITAGFFFHAARKDPQEGY
RTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFYKGA
DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgccggcggcggagggtcccggcgacgacgggctccgaaagttggagtacctg
tcgctcgtctccaaggtctgctcggagctggagacgcacatcggtgtaggcgacaaggta
ctggctgagttcattaccgagctcgggcgcgacgccccctcggtcgccgatttcgacgcc
aagctcaaggccaacggcgccgacctccccgactacttcgtccgcacgctcctcaccatc
atccacgccatcctcccgccgccctcccataaccctagctccgccgcctcgcagtccaac
tccaagtaccgcgcgctctcgcgcccggacgacgcagatcgcgcccgcgagctccgcctc
gagcttgagcgtgatgccaatgctgcagcggcgaccacccctgccccttccagggaccgc
agtcgcgatgaccgctctcgggaccgtgaccatgaccgcacgcgtgatgaacgcggacgg
gatcgtgaccatgaccgcagtcgtgacagagaccgcgggcgtggtgatcgcagccataac
cgtgaccgtgcacatgatgaccgtggccaggatcgtaaccatgaccgaggccgtgaacat
gatcatggctgggacagggatcgagaccgtggtcgcgacagagaccgggagggagatcgg
gacggtaatggtcggagggaccaggactgcctccagcaaagggacagggatacaggcaag
gcccatggaaggagcaggaggtatgtggatgaggaggatggacagcaggaaagggctgga
ggaaggaagacggagaataccatgacaaattcaagtggcgagcctgagctttaccaggtg
taccgggggagggtgacccgtgtaatggacaccggttgctttgtcaagcttgaggatgtt
cgtggtggccgtgaggggcttgttcatgtatcgcagatggcaagcagacgagtagccaat
gcaaaggaggtggtgaagcgtgatcaggaggtgttcgtgaaggtagtttcggtaaaggga
gataagttgagtctctcactgagggatgtggatcaggatacaggaaaggaccttctgcca
atgcagcgtggtgtggaggatgcaccaaggactaacccatctgttggtagtgctgctgct
gctgggcctggaaggagattgggtctatcggggattgtgattacagaggaggatgaggtt
gcacccatctcgcggcgtcccctcaagcggatgagctcaccggagaggtgggaggcgaag
cagctaattgcttcgggtgttcttgatgtgcgggattacccacagtttgatgaggatggt
gatggaatgttgtatcaggaggaaggcgcagaggaggagttggagattgagcttaatgag
gatgaaccagagttcttgcagggacagagcagattctcaattgacatgtcacctgttaag
attttcaagaatccagagggttcattaagtcgagcagcagctctccagactgctctcatc
aaggagcgccgtgaggttagagaacaagagcagagagcaatgctggactcgatacccaag
gatctgaataggccatgggaggacccaatgcccgacacaggcgagcgacaccttgcacag
gagcttagaggtgttggtctatcagcttatgacatgccagaatggaagaaggaagcatat
ggaaaagctttaacgtttgggcaaaggtcaaagctttcaatacaagatcagaggcaaact
cttccaatatacaagttgaagaaagagttgattcaagctgtgcatgataatcaagtttta
gttgttatcggagaaactggctctggaaagacaacgcaggtgacacaatatttggctgaa
gccggttataccacaagaggtaaaattggttgtactcaacctcgtagggttgctgcaatg
tctgttgcaaagagagtggcagaagaatttggctgtcgactgggagaggaagttggttat
gccattcgctttgaggattgcactggcccagaaactgtgataaaatacatgaccgatgga
atgcttctgcgtgaaattttagttgatgagaacctttcccagtattcagtagtcatgctt
gatgaagcgcatgaaaggaccatccacacagatgttctcttcggtttgctgaagcagctt
gttaagcgtagacctgacatgaggcttattgttacttctgctacccttgatgctgaaaag
ttctctgggtatttcttcaactgcaacatcttcacaattccgggaagaacattcccagtg
gagatactctacaccaaacaaccagaaagtgactacttggatgctgcattgattaccgtg
ctgcagatccacttgacagagccagagggtgatatcctcgttttcttgactggtcaagag
gagattgatcatgcctgtcaatgtttatatgagaggatgaaagggctgggaaaggatgtt
cccgagctcataattttgcctgtgtatagcgctctgcctagtgaaatgcagtcaaagatc
tttgagccagctccacctgggaagaggaaggtggtcgtagccaccaatattgctgaagct
tctttaaccattgatggcatatattatgtcatcgaccctggctttgccaagatcaatgtt
tataattcaaaacaagggcttgattcattggtcatcactccaatctcacaagcatcggca
aaacaaagagcagggcgtgctggccgtactggaccaggcaaatgttatcgtctatacact
gaaagtgcttaccgcaatgaaatgtcaccaacgacgattccagaaattcaaaggatcaat
ttgggttctacagttcttaatatgaaggcaatggggataaatgacctactatcctttgat
tttatggaccccccagcaccccaagcacttatctctgctatggaacagctttacagcctt
ggcgctcttgatgaggagggccttcttaccaaactgggcagaaaaatggctgaatttcca
ctggatccaccgctttcaaagatgctactagctagcgtcgaccttggatgcagtgatgag
atactgactattatagcgatgattcaaacggggaatattttctatagacctagagaaaaa
caggctcaagctgatcagaaaagggccaaatttttccagccagagggagatcatcttact
ctacttgctgtatatgaggcttggaaagcaaagaacttttcagggccctggtgctttgag
aactttgttcagtcaagatcgctgaggagagcacaagatgtcagaaagcagcttctaact
atcatggacagatataagttggatgttgtcgctgctgggaagaacttcacgaaaataagg
aaggcgatcactgccggcttctttttccatgctgccaggaaagatccccaggaaggatac
agaaccttggtggagaaccagccagtgtacattcacccaagcagtgcgctgttccagcgc
caaccagattgggtcatttaccacgagcttgtaatgacgaccaaggagtatatgagggag
gtgaccgtggttgacccgaaatggttagtggagttagcgccaagattctacaagggtgca
gatccaaccaagatgagcaagaggaagcgacaggaaaggattgagcctctgtacgacagg
taccacgagcccaactcatggcgtctcagcaagcgccgagcttga
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