Triticum dicoccoides (wild emmer wheat): 119295937
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Entry
119295937 CDS
T07278
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119295937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119295937
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119295937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_SCAP
Beta-prop_NWD2_C
WD40_like
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
119295937
NCBI-ProteinID:
XP_037430259
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All DBs
Position
4B:complement(260085868..260089925)
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AA seq
509 aa
AA seq
DB search
MSMENPRPRPPAITPPMAPLPVHPPIAPIPIPVPPSTSAAADDDEVDYEVSDDHHAARER
HERAVQELLQRRRAYTMAVPTNDSAVRARLRRLGEPITLFGEREMERRDRLRALMVRLEA
DGQFDRLLRVQEDEQGAPGDDDDMEQIQYPFFTEGTNQLLQARVDIAMYSLPRAKARVDR
AKRRLADPDEDPEAEAALVVKQAGDFVLECSEIGDDRPLTGCSFSRDASMLATSSWSGII
KVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADKTAKLWNSDGSLLMSFDGHLD
RLARVAFHPSGKYLGTASFDKTWRLWDINTGTELLLQEGHSRSVYGVSFHPDGSLAASCG
LDANARVWDLRSGRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRQMLYS
IPAHKSLISHVKFEPQEGYYLATSSYDTKAAVCIIRXXXAIKCLAGHESKVTSLDISGDG
QQIVTVSHDRTIKIWSCRSTGRDNEMELD
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggagaaccccaggccgcgcccccctgccatcacccctcccatggctcccctc
cccgtccacccgcccattgctcccatccccatccccgtcccaccctccacatccgccgct
gccgacgatgacgaggtcgactacgaggtctccgacgaccaccacgccgcgcgggagcgc
cacgagcgcgccgtacaggagctcctgcagcgccgacgcgcctacaccatggccgtgccc
accaacgactccgccgtgcgcgcgcgcctccgccgtctcggcgagcccatcacgctcttc
ggcgagcgcgagatggagcgccgcgaccgcctacgcgcactcatggtccgcctcgaggcc
gacggccagttcgaccgcctcctccgcgtgcaggaggacgagcagggagccccgggcgac
gacgacgacatggagcagatccagtatcctttcttcaccgagggtaccaaccaactgctc
caggcgcgcgttgatatagctatgtactcactgccccgcgctaaggccagggtcgacagg
gccaagcgccgcctcgctgaccccgacgaggaccccgaggcagaggccgcccttgttgtc
aagcaggcgggggacttcgtgcttgagtgcagcgagattggagatgaccgcccgctcacc
ggctgctccttctcccgcgatgcctcaatgctcgccacaagctcctggagcgggatcatc
aaagtatggagcatgccacagataactaaaattgcaaccctgaaaggtcatacagaacgt
gcaactgatgttgccttctctccagttgataactgcttagcgacagcctcagctgataaa
actgcaaaattatggaacagcgatgggtcactcctaatgtcttttgatggtcacctggat
cgtcttgctcgcgttgcttttcatccatctggaaagtaccttggtacagctagctttgac
aagacctggagattgtgggacatcaatactggaactgaacttctactccaagagggacat
agcagaagcgtatatggtgttagctttcatccagatggttctttagctgcatcttgtggg
cttgatgcgaatgctcgagtttgggatctaaggtcaggaagattgtactgtactctcatt
ggacatgtgaaacctgtcctaggagtcagcttctcccctaatggtcatctagttgcaact
gcaagtgaagacaatttctgtcgaatatgggatttgaggaccagacaaatgttatattct
ataccggcacataagagtcttatctcgcatgtgaaatttgaaccccaggagggttattat
ttagcgacatcctcctatgacactaaagcagcggtatgcatcatacgnnnnnnnnnngca
attaaatgcttggcaggccatgagtcaaaggtcactagtctggatattagtggagatgga
caacagattgtgactgtttcacatgatagaactataaagatctggtcatgcagaagcaca
ggacgggataatgagatggagttggattaa
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