Triticum dicoccoides (wild emmer wheat): 119301088
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Entry
119301088 CDS
T07278
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119301088
09123 Folding, sorting and degradation
03018 RNA degradation
119301088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119301088
03041 Spliceosome [BR:
tdc03041
]
119301088
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119301088
mRNA cycle factors
Stress granule specific factors
119301088
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Complex C specific factors
119301088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_Nup35
HobA
Motif
Other DBs
NCBI-GeneID:
119301088
NCBI-ProteinID:
XP_037433879
LinkDB
All DBs
Position
5A:291006302..291010874
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AA seq
651 aa
AA seq
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MAAQAASSASEGGSPAAAAAAAAAAASSFPATSLYVGDLDVSVQDAQLFDVFAQIGGVVS
VRVCRDVTSRKSLGYAYVNYNTPADAARALEMLNFTPINGRPIRIMYSNRDPSLRKSGTA
NIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDPAGESKGYGFVQYERDEAAHAAIEKL
NGMLMNDKKVYVGPFVRKQERDNSPGNVKFNNVYVKNLAETTTEDDLKEIFGKFGAITSV
VVMRDGDGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKF
EKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFTEFGTITSCKVMRDSNGASRGSGFVA
FKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQ
MLPPGVPVGQQMFYGQPPAFINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQR
PAGRRAGAGGMQQSMQMGQQQMLGRGGGRGYRYPTGRGMPDPAMHGVGGVMTSPYEMGGM
PMRDAGASQPVPIGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQ
TEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGLISS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggcggcgagctcggcgtcggagggcggctccccggccgcggcggccgct
gcggctgcggcggcggcatcgtcgttcccggcgacatcgctttacgtgggcgacctcgac
gtgagcgtgcaggacgcgcagctcttcgacgtcttcgcccagatcggcggcgtcgtctcc
gtgcgcgtctgcagggacgtcacctcgcggaagtcgctcggatacgcctacgtcaactac
aacaccccggctgacgctgcacgggctcttgaaatgctcaacttcactcctatcaatgga
cggcctatcaggataatgtattctaaccgtgaccccagcttgcgcaagagtggcacagca
aatatatttattaagaatcttgacaagtcaattgacaacaaagctttgtatgacacattt
tgtgtgtttggaaacattctttcatgtaaagttgcaacagatcctgctggggaatcaaag
ggctatggcttcgttcagtacgagcgggatgaggctgctcatgctgctatcgagaaactg
aatgggatgcttatgaatgacaagaaggtgtatgttgggcctttcgttcgtaagcaggag
agagataactctcccggcaatgtcaagttcaataatgtctatgttaagaacctagctgag
actaccactgaagatgacttgaaggaaatctttgggaagtttggagcaataacaagtgtt
gttgtaatgcgggatggggatggaagatccaagtgttttggatttgtgaattttgaaagt
ccagatgaagctgctctggctgttcaagatttgaatggcaagaaatttagtgacaaggaa
tggtatgttggaagagcgcagaaaaagtcagaaagggagatggaattgaaagagaagttt
gaaaagaaccttcaagaggcagcggataagtatcagaacaccaacttgtatctgaagaac
ttggatgatactgttgacgatgaaaagttgcgtgaactttttactgagttcggaactatt
acttcctgcaaggttatgcgtgattcaaacggtgctagcagaggttctggatttgtcgct
tttaaatctgctgatgatgcttcccgagctcttgctgaaatgaacaacaagatggttggc
aataaaccactttatgttgcactcgcacagcgcaaggaagacaggaaagctaggctgcag
gcacagttttcacaaatgcgtcctgttccaatggctcaaactgttggtcctcgtatgcaa
atgttacctcctggtgttccagttggtcagcaaatgttctatggccagccaccagcgttt
attaacccacagcctggatttggcttccagcaacctttcatgccgggaatgaggccaggt
ggtgctccgatgccaaactttatgatgcctatggttcagcaaggacaacaaccacaacgc
ccagctggtaggcgagctggtgctggtggaatgcagcaatccatgcagatgggtcagcag
cagatgctgggtaggggtggtggtcgtggttaccgctatccgaccgggcgtggcatgcct
gatcctgcgatgcatggtgttgggggtgtgatgacatccccatatgagatgggagggatg
cctatgagagatgccggtgcgtcacagccggttccaattggggcactggcttctgcactt
gccaattcacccccagagacgcaaagaatgatgcttggcgagaacttgtaccctcttgtt
gatcagctggagcacgaccaggctgccaaggtgaccggcatgcttctggagatggaccag
actgaggtgcttcacctgcttgagtcgccagacgctctcaaggccaaggttgctgaagcc
atggaggttctccgcagcgctcagcagcacaccaaccagtcccctgagcagcagctggct
tcgctctcgctgaatgacggcctcatctcttcctaa
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