Triticum dicoccoides (wild emmer wheat): 119302252
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Entry
119302252 CDS
T07278
Name
(RefSeq) flowering time control protein FY-like
KO
K15542
polyadenylation factor subunit 2
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119302252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119302252
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119302252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
eIF2A
Beta-prop_HPS5
Tricorn_2nd
WD40_RFWD3
Beta-prop_Vps41
PEP5_VPS11_N
WD40_like
WD_LRWD1
WDR54
B-prop_COPA_B_2nd
DUF7822
Motif
Other DBs
NCBI-GeneID:
119302252
NCBI-ProteinID:
XP_037435187
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Position
5A:complement(452167974..452176877)
Genome browser
AA seq
709 aa
AA seq
DB search
MMQQQQQQQPLPPPPPQHPPPQPGGGGGDFYRGPLQPPMRQLSAASSTNLAPDYAGHPGP
QQHHQQQQHQQQQQQQPFDAYGDNFGAKRMRKPVQRRTVDYTSSLVRYAQARMWQRDARD
RFTLQPTAAAVLDMLPSVAYPDNPSTSFAGKFVHSSINKNRCSINCVVWTPTGRRLITGS
QSGEFTLWNGQSFNFEMILQAHEQAVRSMIWSHNENWMVTGDDGGAIKYWQSNMNNVKVN
KTAHRESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS
LLASGGKDYLVKLWDAKSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRS
MKELESFRGHNKDVTALAWHPFHEEYFVSGSYDGGIFHWLVGHEAPQIEINNAHDNSVWD
LAWHPVGYLLSSGGNDHATRFWCRNRPGDLTRDKFNSGQIQGYGDQHSAFAGRFQMPEQT
PGPFAGTIPGIGVAMHLVGSDHGEQRPSIPGLPPGPPPLPPGPHPSLLPTGQQQHYQQMP
QQQHSQFRPPPPNMPPPAHILQHQQGPRSSLPQLPSMPGSMPGPSPVNPPLPPMPHPMAM
QGSSTQMMPQMPQHLIGLNQNHPGSIPPGNMPPMGSFPNGMGNIQGSSGASGMQNFPMGS
MYNRPQGQMAPQGQMSSIPGLGSYQPGMGNVGLPPPPPQHPPPRGAAPQ
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcaacagcagcagcagcagcctctgccgccccctccgccgcagcacccgccg
ccgcagcccggcggcggcggcggggacttctaccgcggcccgctgcagccgccgatgcgg
cagctctctgcggcgtcatccaccaacctcgcgcccgactacgccggccacccgggaccc
cagcagcaccatcagcagcagcaacatcaacagcaacagcagcagcagccgttcgacgcc
tatggggacaattttggcgctaagaggatgcggaagcctgtccagcgacgaacagtggac
tacacgagctctctcgtccgttatgctcaggctcgcatgtggcagcgggatgcaagggat
agattcacgttgcagccaaccgcagctgctgtcctggatatgttgccttctgttgcatac
ccagacaacccctctacaagttttgctgggaaatttgttcattcatctatcaataagaac
cggtgctccataaactgtgtcgtgtggactcctacgggacgccggcttattactggatca
cagagtggtgaattcaccctatggaatggacaatcttttaattttgaaatgattcttcag
gctcatgaacaagccgtgagatcaatgatttggagtcacaatgaaaattggatggttacg
ggtgatgatggtggtgcaataaagtattggcaaagtaacatgaacaatgtcaaagtgaat
aaaactgcacacagagaatcagtccgtgacttgagcttttgtagaacagacctgaagttc
tgttcatgttctgatgacacaaccgtgaaggtttgggacttcgcaagatgccaagaagaa
agatccctaactggccatggttgggatgttaaaagtgtcgattggcatcccacaaaatct
ttactggcttcaggtgggaaagactatcttgtaaaactctgggatgcaaaaagtggtagg
gagctacgttcattccatggtcataaaaatattgtgcagtgtgtaaaatggaatcagaat
gggaactgggttttgactgcgtctaaggatcagattatcaagttatatgatattagatcc
atgaaagaacttgaatccttccgtgggcacaataaggatgtaactgctttggcatggcat
ccattccacgaagaatactttgttagtgggagctatgatggtggaatctttcattggttg
gtcggccatgaagccccacaaattgaaataaataatgcacatgacaatagtgtgtgggac
cttgcctggcatccagtgggctatctactttccagtggtggcaatgatcatgctacaaga
ttctggtgtagaaacaggcctggcgatcttacccgtgataaattcaacagcggacagatc
caaggttatggtgaccaacactctgcttttgctggtcgattccagatgcctgaacaaaca
cctgggccatttgctggtacaatacctggcattggtgttgcaatgcatcttgttggatct
gatcatggagaacagaggccatctatacctggtcttccacctggcccgcctccgttgcca
ccaggtcctcatccatctcttctacccactgggcagcagcaacactatcaacagatgcct
cagcagcaacattctcaatttcggccaccgcctccaaatatgccaccgccagcacacatt
cttcaacatcaacaaggacctcgatcatcacttcctcagcttccatcgatgccaggttcc
atgccagggccatcaccagtgaacccaccgctaccacccatgccacacccaatggcaatg
caaggttcgtcaacccagatgatgcctcaaatgccacaacacttgattggcctgaaccag
aatcatccgggttccatccctcccggcaatatgcctccaatgggcagcttcccgaacgga
atgggaaacattcaaggttcctcaggtgcttctggcatgcaaaactttcctatgggcagt
atgtacaaccggcctcagggccagatggctccacaaggacagatgtcatccattcctggt
ctaggttcttaccagccagggatgggcaatgttggccttccaccaccgccgccacagcat
cctccgcctcgcggtgcagcaccacagtga
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