Triticum dicoccoides (wild emmer wheat): 119302260
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Entry
119302260 CDS
T07278
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119302260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119302260
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119302260
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119302260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
119302260
NCBI-ProteinID:
XP_037435194
LinkDB
All DBs
Position
5A:453148915..453157512
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AA seq
622 aa
AA seq
DB search
MSSLLNSNLNSSASNLPDSTGRPFATSFSGQSGSVQGLHHSGLRNIHGNFSLPSMPGSLA
QRNAVMSGLPSSGVQQPGGSISGRFASNNLPVAMSQIPHAHSGVSGRGMNVGGGQAFSSG
MNMGGTIQGLYSNLGTSGNRNSVPGMSVSPALGNLGPRITSSAGNIVGGSNIGRSISSGG
LSVPSISSRIDFSSNAGSGRLNVQGSNRIMNGLNPQGSSQLINMIGNSYPTSGGSLSQNQ
MQPGNNSLGSMGMLHDASDSTPFDINDFPQLTGRPNSAGGPQGQYGSLRKQGVGVNSIVQ
QNQEFSIQNEDFPALPGFKGSSSDYAMELNHTEQLHENVPVMQGQQYPMARSVGFNLGNS
YQPNRQQHLQGANSIQSSGPQNIGLRPLNSSSQTSNLGSYEQLLQQYQQPKAQSPFGLQQ
MSSATQPYGDHGLKPILGGRTPPDPYGLLGLLGVIRTNDPDLSSLALGIDLTTLGLNLNS
PDNLYKTFGSPFSNEPAKGDPEYPTPACYVAEQPPALQPMHFQKFQTLILFYIFYSMPKD
EAQICAANELHNRGWFYHKEAQQWFTRIPNMEPIVKTPTYEQGSFAFFHQGNWETVRKDN
FVLHYELVEKRPSLPSASQIVR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcttgctgaattcaaatcttaacagttccgcatcaaatcttccagactcaacc
ggacgaccatttgcaacatccttttctggtcaatctggatcagttcaaggtctccatcac
tctggtctgcgcaacattcatggaaatttcagtcttccaagtatgcctggatcacttgca
caaaggaatgctgtgatgagcggccttccatcctccggggttcaacaacctggagggagc
atttctggcagatttgcttcaaacaaccttccagttgccatgtctcagattcctcatgca
cattcaggtgtcagtggtagaggaatgaatgttggtggaggtcaagcatttagtagtggc
atgaatatgggtggtaccattcaaggtttatactcaaatttgggcaccagtggtaatcga
aattctgttcctggcatgtcagtgtctccagctttaggaaacttgggtccacgtattaca
agctccgcaggaaacatcgtgggtggaagtaacattggaagaagcataagctctggtgga
ttgtcggtgccgagtatctcatcacgcatcgattttagtagcaatgctggaagtggaaga
ctaaatgtgcaaggatccaacaggataatgaacggccttaatcctcaaggatcatcacaa
ctgatcaatatgattggtaattcatacccaacgtctggaggttcattatcccagaaccaa
atgcaaccaggaaataattctctaggttctatggggatgctacatgacgccagtgacagc
actccattcgacatcaatgatttcccccaattgactggtcgacctaattcagctggtggt
ccgcaaggacaatatggatcactacggaagcaaggagttggtgttaactccattgttcaa
caaaaccaggagttcagtattcagaacgaagatttcccggctttgccaggatttaaaggt
agcagttcagattatgctatggagttaaatcacacggaacaacttcacgagaatgtacct
gtaatgcaaggacaacaatatcccatggcaaggtccgttgggtttaatttaggaaatagc
taccaaccaaatcgtcagcaacatctgcagggtgctaattcaattcagagctccggacct
caaaatattggactaagaccactaaactcttcgagtcaaacttctaatttgggatcatac
gagcaactgctccagcaataccagcagccgaaggctcagagtcctttcgggttgcagcag
atgtcttcagccacacagccatatggggatcatggtctaaagcccattctgggaggccga
acaccacctgatccatatggcttgttgggattgctgggagttataaggacgaatgatcct
gatttgtcatctcttgctttgggaatagatttgacaacgttgggtttgaatttgaactca
ccagacaatctgtacaagacatttggctctccattttcaaatgagccagcaaaaggagat
ccagaatatcctactccagcttgttatgtggctgagcaacccccagcactacagcctatg
cattttcagaaatttcagacactcatactgttttacatattctacagcatgccgaaggat
gaagctcaaatatgtgctgccaatgaactacataatcgtggatggttttaccataaagaa
gcgcagcaatggttcacaagaattcccaacatggagcctattgtcaaaactcctacatat
gaacaggggtcttttgccttctttcatcaaggcaattgggaaacagtccgtaaggataac
tttgttctccattatgagctagtagagaaaaggcctagtctcccttccgcgtcccaaatt
gttaggtga
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