Triticum dicoccoides (wild emmer wheat): 119303134
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Entry
119303134 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119303134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119303134
03012 Translation factors [BR:
tdc03012
]
119303134
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119303134
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119303134
Translation factors [BR:
tdc03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
119303134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
ABC_tran
NACHT
ATPase_2
AAA_23
AAA_16
Myosin_head
Motif
Other DBs
NCBI-GeneID:
119303134
NCBI-ProteinID:
XP_037436119
LinkDB
All DBs
Position
5A:complement(591706158..591713058)
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AA seq
1148 aa
AA seq
DB search
MRRVLRRGLGILLVPLPGPLSRPPPIPLAALLLLPRRLDAFFRRPFCDYSGGRAVEQFSD
DEYDHEYEDHRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKRMG
LYSELYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGFVQEHLDRSLLPFNK
DGGKSESGSEKAEHVNLDEKQDPLLDESVMEKILQRKSLRMRNFQRTWQESPEGAKMVEF
RKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIICTQ
PRRISAMAVAERVSTERGENLGESVGYKVRLEGIRGKDTHLLFCTSGILLRRLLSDRNLN
GVSHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPTIHI
PGFTHPVRAHFLEDILERTGYKMTASNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVEDA
LQNSNFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERAGAVLVFMTGWDDISSLK
DQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFDKAPPNVRKVVLATNMAEASITINDIV
FVMDCGKAKETTYDALNNTPCLLPSWISKASSRQRRGRAGRVQPGECYHLYPRCVYDAFA
EYQLPELLRTPLNSLCLQIKSLQVDSIGEFLSAALQPPEPRAVQNAVEFLKMIGSLDENE
NLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKKDLAGTA
KSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQFSYILK
DAGLIDSDANTNNSLSHNQSLVRGVICSGLFPGISSVVHRENSMSFKTMDDGQVLVYANS
VNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSAAGHLKMLDGYI
DLFMDPSLSECYLQLKEELDKLVQKKLEDPTFDIHKEGKYILFAAQELAAGDLCEGRFVF
GRETSRARLRDNEDGKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAMVEF
KGMQFVGKPKRNKQVAERDAAIEALGWLTQTSGTKLQDEGDDSPLDLTDNMLKLLSRPRK
RTRNNPKK
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcgtcttgcggcgcgggctgggcatcctcctcgtcccactccctggcccactc
agccggccgccgccgatccctctcgctgctctcctcctcctcccgcgccgcctggatgcc
ttcttccgacggcccttctgcgactacagcgggggccgcgccgtcgagcagttctccgac
gacgagtacgaccacgagtacgaggaccaccggccgtcgtcgtcggtggcgaacatcgac
gagtggaggtggaagctgagcatgctgcagcgcaatgcggaggagcaggagatcatctcc
agggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagaggatgggg
ctctacagtgagctgtatgggaaggttattgttgcgagcaaggtcccgctgccgaactac
aggccggacctggacgacaagcgcccgcaaagagaggtggtgatcccactaagcttgcag
aggagggttgaaggatttgtgcaggagcaccttgaccgttcgctcttgccatttaataaa
gacggtggcaagtcagagagtggttctgagaaagctgagcatgtgaacttggatgagaag
caggatcctctgctcgacgagtcggttatggagaagatccttcagaggaagagtcttagg
atgcgcaattttcaaagaacttggcaggaatcacctgaaggcgctaagatggtagaattt
cggaaatcactcccagcatacaaggagaaggaaaggcttctagcagccattgcacgtaat
caggttatagttatttctggggagacagggtgtggaaaaacaacacagttgcctcaattt
gtgttggagtcagagatagaatctggtcgaggggccttttgtaacataatctgtacacag
ccacgaagaatatctgcaatggctgttgcagaaagagtatccaccgaaagaggagaaaac
cttggtgaatcggttggctacaaagttcgattggagggaattagaggaaaagatacacat
ttacttttctgcaccagtggtattttactaagacgattgctgagtgaccgaaacttgaat
ggagtatctcatgtatttgttgatgaaatacatgaaagagggatgaatgaagatttctta
ttgatcgttctaaaggacctattgtcacggcgccgcgatctaaggttgatattgatgagt
gctactttaaatgcggaactgttctcaagttatttcggaggagcgccaactatccacatt
cctggattcacacatccagtgagggcgcattttctggaagacatattagagaggacaggc
tataagatgacagcaagtaatcaacttgacgattacggccaagataaagtgtggaagact
cagagacagctattaccaagaaaaaggaaaaatcaaattactacacttgtcgaggatgcc
cttcaaaattcgaactttgaaacctatggctcaaggacacgtgattctctggcaaactgg
aatcctgattgcatagggtttaatctcatagaggctgttctgtgccacatatgtcgcaaa
gaacgagctggtgcagttttagtttttatgaccggatgggatgacattagctctttgaag
gatcaactaaaagcgcatccgttgctaggcgacccaaatagagtgttactgcttgcatgc
catggttccatggctacctctgagcagaggctaatatttgacaaggcacctcctaatgtt
cggaaggtagtacttgccactaacatggcagaggcaagtattaccataaatgacatcgtt
ttcgtcatggattgtggaaaagcaaaggaaaccacatacgatgctctaaacaacactccc
tgcttgctcccctcatggatttcaaaggcttcttcccgtcagaggaggggcagagctggt
cgtgtccaacctggagaatgctatcatctctacccccgatgtgtatatgatgcatttgca
gagtaccagcttccagagcttcttaggactcctttgaattcactatgtttgcagataaaa
agtttgcaggttgacagcattggggagtttctatcagctgctttgcagcctccagaacca
cgagccgtccaaaatgcagtggaattcctgaagatgatcggatcattagatgagaacgag
aaccttactgatctaggaagatacctctccatgcttccagttgatccgaagttggggaag
atgcttataatgggtgcagttttccgttgcattgaccctatacttactgtggttgctgga
ttgagtgcccgggatcctttcctgttgccacaggacaagaaagatttggcaggaactgca
aaatcaagattctcagcgaaagactatagtgatcatatggcccttgtacgagcttatgaa
ggatggaaggatgctgagagggaaggatctggttatgagtactgttggaggaatttcctt
tctgctcaaacactacaagccattcattctcttcgaaagcaattcagctatatcttaaag
gacgccggtttgatagactctgatgcaaatacaaataatagtttgagccataatcaatca
ttagttcgtggtgtaatttgttctggactttttcctgggatatcatctgttgtgcatagg
gaaaactccatgtccttcaagaccatggatgacggccaagttcttgtttatgctaactcc
gtgaatgctaagtaccagaccatcccttatccatggctggtctttggtgagaaggtgaag
gtaaatgctgtcttcatccgtgattcaactggagtatcagattccatactgatcttattt
ggtggtgctgttacaaaaggaagcgcggctgggcatttgaagatgcttgatggttacatt
gatctatttatggatcccagcctgtcagagtgctacttgcaacttaaagaggaacttgat
aaacttgtacagaagaagcttgaagacccaacctttgacattcacaaggaaggcaaatac
attttatttgctgcacaagagcttgctgcaggcgacctatgtgaaggaaggtttgtgttc
ggccgagaaacgagcagagctaggcttcgggacaacgaagacggcaaaagcaacatcata
aaggatggtatgaacccaaagagcctgctgcagaccttgctgatgagggcaggccacacg
cctccaaagtacaagacaaagcacctcaagaccaacgagttcagggccatggtggagttc
aaagggatgcagttcgtcgggaagccgaagaggaacaagcaggtcgcggagagggacgcc
gcgatagaagcgctgggatggttgacacaaacgtccggtacgaagctccaggatgagggt
gacgactccccgctcgacctgaccgataacatgcttaagctgctttctagaccaaggaaa
cggacgagaaataacccgaagaaatga
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