KEGG   Triticum dicoccoides (wild emmer wheat): 119303176
Entry
119303176         CDS       T07278                                 
Name
(RefSeq) cleavage stimulation factor subunit 50-like
  KO
K14406  cleavage stimulation factor subunit 1
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    119303176
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119303176
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     119303176
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd EIF3I Beta-prop_WDR36-Utp21_2nd WD40_WDHD1_1st WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_Aladin WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_RIG_2nd Cytochrom_D1 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR75_1st Ge1_WD40 Beta-prop_NOL10_N Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_VPS8
Other DBs
NCBI-GeneID: 119303176
NCBI-ProteinID: XP_037436169
LinkDB
Position
5A:595682157..595686899
AA seq 424 aa
MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASVPNHLLRLVAKGLA
AEREEAARGGGAPAAFDSGAGGGGLARPLGTNAVDFSVQNVRGPSKTFPKHETRHISDHK
NVARCAKFSPDGKYFATGSGDTSIKFFEVSKIKQTMLGDSKEGSGRPVVRTFYDHVQPIN
DLDFHPISPILISGAKDNTIKFFDFSKTAARKAFRVIQDTHNVRSVCFHPCGDYILAGTD
HPVAHLYDVNTFTCFLSANRQDSSAAINQVRYSGTGSMYVTASKDGSLRIWDGVSAECIR
PIIGAHGSVEATSAIFTKDERYILSSGKDSCIKLWEVGTGRLVKQYPGGVNTQFRCQAAF
NETEEFVLSTDEQNNEVVIWDALTSERVARLPSGHTGAPRWLEHSPVEPVFVTCGNDRSV
RFWK
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggacgcggcggtgcaggaggcgaagctgctgcggcaggtgaacgccctcatcgtggcg
cacctccgcgaccagaacctcacgcaggccgccgccgccgtcgccgccgccaccatgacc
cccaaggccgacgcctccgtccccaaccacctactccgcctcgtcgccaagggcctcgcg
gccgagcgggaggaggcggccaggggaggcggagctcccgccgcgtttgactccggtgct
ggcggcggtgggctggcgcgcccgctcggcaccaatgccgtggatttcagtgtgcagaat
gttaggggcccgtccaagactttccccaagcatgaaaccaggcacatctccgatcataag
aatgttgccagatgtgcaaaatttagtcctgatgggaaatattttgcaactggaagtggg
gacacatccattaagttctttgaggtatcgaaaattaagcagacgatgttaggagactcc
aaagaaggctctggccggcctgtggtccgtacattttatgaccacgtgcagcccatcaat
gatctggatttccatcctattagcccaatactgatatctggagcaaaagataatacgata
aagttctttgacttctccaaaactgctgcaagaaaagcattcagagttattcaggatact
cataatgttaggtctgtatgttttcatccttgcggggattacattttagcagggactgat
cacccagtagctcatctctatgatgtaaacactttcacatgcttcttatccgcaaatcgg
caggactctagtgctgccatcaaccaggtgcgttactcgggtactgggagcatgtatgtg
actgcttctaaggatggttctctgcgcatctgggatggagtatctgctgaatgtatccgt
cccataattggagcacatggatctgtagaagctacgagtgcaattttcaccaaagacgag
aggtacatcctatccagtggaaaggattcgtgtataaagttatgggaagttggcaccgga
agacttgtgaagcaatatccaggtggtgttaatacacaattccggtgtcaggctgccttc
aacgaaacggaggagtttgtactatcaaccgacgagcaaaacaatgaggttgtcatctgg
gacgcacttacttccgagagggtggcaagattgccctctggccataccggcgcccctagg
tggctggagcactcccctgtagagccagtgtttgttacatgcggaaacgatcgatccgtc
agattctggaaataa

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